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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaattcaatcaatttctttcctgcaaattttaaacacattcaattccttaatcacaggatcagggtgtttgcatttaatgttgagctctaacatcttggttcggaagataaacatctcctttgttacattgtagGTGCCAGCCTTCTTGTATATCAGCTTTTTATCTACGGTTGGGTTGATAAAATTCTTGGACCTATCCACTCAACCCGCATTTCAGCG

Basic information

species Oryza sativa
transcript LOC_Os12g03860.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793589|gb|CF322679.1|CF322679
EST:     TGGACTCAGCTTTTCATCTAAAGATGTTGGGCAAGTTCTTGCAGTGGCAG                         GTGCCAGCCTTCTTGTATATCAGCTTTTTATCTACGGTTGGGTTGATAAAA
genomic: TGGACTCAGCTTTTCATCTAAAGATGTTGGGCAAGTTCTTGCAGTGGCAGgtaagtcaaa ... tacattgtagGTGCCAGCCTTCTTGTATATCAGCTTTTTATCTACGGTTGGGTTGATAAAA
EST: gi|33795491|gb|CF323615.1|CF323615
EST:     TGGACTCAGCTTTTCATCTAAAGATGTTGGGCAAGTTCTTGCAGTGGCAG                         GTGCCAGCCTTCTTGTATATCAGC
genomic: TGGACTCAGCTTTTCATCTAAAGATGTTGGGCAAGTTCTTGCAGTGGCAGgtaagtcaaa ... tacattgtagGTGCCAGCCTTCTTGTATATCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagctctaacatcttggttcggaagataaacatctcctttgttacattgtagGTGCCAGCCTTCTTGTATATCAGCTTTTTATCTACGGTTGGGTTGATAAAATTCTTGGACCTATCCACTCAACCCGCATTTCAGCG
      ctctaac  putative branch site (score: 2)
                                   tctcctttgtt  putative PPT
                         aagataaa  TA-rich tract