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gtatgatatggcaaactttgttcaggttaactctgttgataactctgaattggcatctaaattctcgcttttcttttgcattggttgtgcccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCCAATCATTCTCACCATATCGAGCTATGAA
species | Oryza sativa |
transcript | LOC_Os12g02390.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TAGTGGTAGCCGGCATTTCAGGATACCCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCCCCATCATGGCCCAGTACATGCCCCTGEST: gi|58673963|gb|CK062649.1|CK062649
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|88955756|gb|CI092045.1|CI092045
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|86850762|gb|CI338738.1|CI338738
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCA-GATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|2312600|gb|C28755.1|C28755
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|88837810|gb|CI079170.1|CI079170
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG TGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|88960134|gb|CI382012.1|CI382012
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|86415054|gb|CI069457.1|CI069457
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGEST: gi|86494648|gb|CI137281.1|CI137281
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCNTGEST: gi|86842050|gb|CI338421.1|CI338421
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
EST: TAGTGGTAGCCGGCATTCCAG-ATACCCAGTATACAAGTACAG-ATCCGG AGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
genomic: TAGTGGTAGCCGGCATTGCAGGATACGCAGTATACAAGTACAGGATCCGGgtatgatatg ... ccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTG
tgaattggcatctaaattctcgcttttcttttgcattggttgtgcccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCCAATCATTCTCACCATATCGAGCTATGAA
atctaaa putative branch site (score: 9)
atctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatatggcaaactttgttcaggttaactctgttgataactctgaattggcatctaaattctcgcttttcttttgcattggttgtgcccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCCAATCATTCTCACCATATCGAGCTATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG