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gtagtaatggatgattgcttaggatgtaggccaattctgttagaaagcaaagttgttgacttgagtgattttgtggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAAAGAAAAAAGATAGTGATGCATAATTATTAGATTAACATCTTACAGCAA
species | Oryza sativa |
transcript | LOC_Os12g01580.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG GTTAGGGAGCAAAGGTGGACCATGGAAAATAATTTGGTCTGAAACTGAGTAEST: gi|29639601|gb|CB644610.1|CB644610
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAEST: gi|25806216|gb|CA762177.1|CA762177
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAEST: gi|86875497|gb|CI323892.1|CI323892
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: GCTGCCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTATGGAG GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAEST: gi|88254712|gb|CI353536.1|CI353536
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: CTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAEST: gi|86850911|gb|CI338887.1|CI338887
genomic: CTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
gccaattctgttagaaagcaaagttgttgacttgagtgattttgtggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAAAGAAAAAAGATAGTGATGCATAATTATTAGATTAACATCTTACAGCAA
tgttgac putative branch site (score: 3)
tttttc putative PPT
ttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaatggatgattgcttaggatgtaggccaattctgttagaaagcaaagttgttgacttgagtgattttgtggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAAAGAAAAAAGATAGTGATGCATAATTATTAGATTAACATCTTACAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA