1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...agatatatatagaaactagaaaacctttgcttgagggcatttttgcagttcatggtctcttgttgtactgcatcttttgactatggtaatatttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAGCAGTGATTCACTATTCACCTGAAGCAAGTTCATGTGCTGAACTTGATG
species | Oryza sativa |
transcript | LOC_Os11g33330.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG CACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAEST: gi|58680853|gb|CK069540.1|CK069540
genomic: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAGgtatgctgct ... atttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCA
EST: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG CACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAEST: gi|33794779|gb|CF323269.1|CF323269
genomic: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAGgtatgctgct ... atttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCA
EST: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG CACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAEST: gi|66922750|gb|CX109598.1|CX109598
genomic: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAGgtatgctgct ... atttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCA
EST: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG CACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAEST: gi|88574886|gb|CI666655.1|CI666655
genomic: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAGgtatgctgct ... atttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCA
EST: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG CACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCA
genomic: CTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAGgtatgctgct ... atttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCA
cagttcatggtctcttgttgtactgcatcttttgactatggtaatatttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAGCAGTGATTCACTATTCACCTGAAGCAAGTTCATGTGCTGAACTTGATG
ttttgac putative branch site (score: 100)
tatttct putative PPT
taatatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatatatatagaaactagaaaacctttgcttgagggcatttttgcagttcatggtctcttgttgtactgcatcttttgactatggtaatatttctgcagCACTTCAAAGGTCTGAGTTTCCCTACGATTTCATCCGTGGGACCAAATGCAGCAGTGATTCACTATTCACCTGAAGCAAGTTCATGTGCTGAACTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - -gaaacta
- - - - - - - - - - - - - ttgcttg
- - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttttg