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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA

Basic information

species Oryza sativa
transcript LOC_Os11g31640.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G137556_T01 (Zea mays), 3'ss of exon 6
------------gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
            || |||| | |   |  || |||||    | |||    |    ||||   |    |  | |  |  ||||  | | || || ||||||  ||||||||||||||||||| || |||||||||||||| ||||||||||  || || ||||||||||||| ||||||||| ||||||||||||||       |
aaagcccttgatgtcagtgttataaatacttcatttt----tattctaggagtcataaataaagctgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGTAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAGGAATCAA

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 13
------------gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA-
            ||||||| | |   |  || |||||    | |||    |    ||||   |  | |  | |  |  ||||  | | || || ||||||  ||||||||||||||||||| || |||||||||||||| || |||| ||| || || ||||||||||||| ||||| ||| |||||| |||||||       | 
aaagcccttgatgtgagtgttataaatacttcatttt----tattctaggagtcataaataaagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATA-TTCCATGCAGAACCACCAAAGATTGCTGGAGCTGGTCATGATAAGTTGGAGTAGGAATCAAC

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G157249_T01 (Zea mays), 3'ss of exon 4
gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
||||||| | |   |  || |||||    | |||    |    ||||   |  | |  | |  |  ||||  | | || || ||||||  |||||||||||||||||||||| |||||||||||||| ||||||||||| ||  | ||||||||||||| ||||||||| ||||||||||||||       |
gtgagtgttataaatacttcatttt----tattctaggagtcataaataaagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGTGACCTTGTGGGCATCAAATACTTCCCTGCAGAAACACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAGGAATCAA

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G055854_T01 (Zea mays), 3'ss of exon 9
------------gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
            ||||||| | |   |  || |||||    | |||    |    ||||   |  | |  | |  |  ||||  | | || || ||||||  ||||||||||||||||||| || |||||||||||||| || |||| ||| || || ||||||||||||| ||||| ||| |||||| |||||||        
aaagcccttgatgtgagtgttataaatacttcatttt----tattctaggagtcataaataaagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATA-TTCCATGCAGAACCACCAAAGATTGCTGGAGCTGGTCATGATAAGTTGGAGTAG-------

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G357734_T03 (Zea mays), 3'ss of exon 16
gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
||||||| | |   |  || |||||    | |||    |    ||||   |    |  | |  |  ||||  | | || || ||||||  ||||||||||||||||||| || |||||||||||||| ||||||||||| || || ||||||||||||| ||||||||| ||||||||||||||        
gtgagtgttataaatacttcatttt----tattctaggagtcataaataaagctgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAG-------

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G142030_T01 (Zea mays), 3'ss of exon 11
gtgagtgctttcgtttgttaattttcggctg------ttcacatatgtttaaacggatt--ccaattcacattgttctcatgtttgtaatccact--cagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
||||||||| |   |||||  |||| |||        ||||  |   | |    |   |  | || | |  |  |||   | |  | || |||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||| ||| ||||||||||||||   |   |
gtgagtgctgtatcttgtttttttttggcataaatacttcatttcattctgggtgacataacgaactgatgtgtttcctgtctgcgcaacccacttccagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGAAGCTGGTCATGATAAGCTGGAGTAGGAGCGAA

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G030862_T01 (Zea mays), 3'ss of exon 10
------------------------gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccac--------tcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA-
                        ||   |||| |   |  ||  ||||     |||  || || | ||||  ||  | || | || |  |||   | | || || || |         ||||||||||||||||||||||| || |||||||||||||||||||||||  | |  ||||||||||||||||||| |||||  ||  ||  |     ||    
gtgagcgttaatttttttttttgggtctctgctgtaaatgcttcgtttt-attcgttggcacatatataaatagagccgaactgacgtgtttcctgtctgtgcaacccccatatattaccagGTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAACGACCAAAGATTGCTGAAGCTGGTCACGGCAA-TTGAGGCGGTAGAGAGG

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G152888_T01 (Zea mays), 3'ss of exon 11
gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
||||||| | |   |  || |||||    | |||    |    ||||  ||  | |  | |  |  ||||  | | || || ||||||  ||||||||||||||||||| || |||||||||||||| ||||||||||| || || ||||||||||||| ||||||||| ||||||||||||||       |
gtgagtgttataaatacttcatttt----tattctaggagtcataaatagagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAGGAATCAA

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G067257_T01 (Zea mays), 3'ss of exon 12
gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactc--agGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
||||||| | |   |  || |||||    | |||    |    ||||   |    | || |  |  ||||  | | || || ||||||  ||||||||||||||||||| || |||||||||||||| ||||||||||| || || ||||||||||||| ||||||||| ||||||||||||||        
gtgagtgttataaatacttcatttt----tattctaggagtcataaataaagctgagttgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAG-------

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 11
gtgagtgctttcgtttgttaattttcgg---ctgttcacatatgttta------aacggattccaattcacattgttctcatgtttgtaatccact--cagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAG-ATTGCTGAAGC--TGATCACGATAAGCTGGAGTAAATGATGA
 ||  || |||  | || |  ||   ||    |||| | || || |         |  | ||     |   | | ||   ||| ||||  | |  |   ||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||  ||||| |      | |   | |    |  ||| | || | |  ||   
ttgtttgttttgatatgcttcttacagggttttgtttaaatttgctacttccatgataggttttgtgtggtaat-ttgctatgattgttcttctttgttagGTTATTAGCAGAGTGGGTGATCTTGTTGGCATAAAATATTTCCCTGCTGAACCAACAAAGCAGCAACAAGGGGGTAAATCTGTGAAGTTTGATTGAGAGA---

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA16G26210.1 (Glycine max), 3'ss of exon 11
---gtgagtgctttcgtttgttaattttcgg----ctgttcacatatg---tttaaacgg-attccaattcacattgttctcatgtttgtaatccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA--
    ||  || |||  | |  |  ||   ||     |||| | || ||   |||  | |  ||      | |  ||| | | || ||  |  |   || ||||||| |||||||| ||||||||||| ||||| || ||||||||||| || ||  |||||       |     |    |  || |||       ||||    
attttgtttgttttgatatacttcttacagggattttgtttaaatttgctatttccatgatatgttgtgttaatttgctatgatcttctttcttt-cttagGTTATTAGCAGAGTGGGTGATCTTGTTGGCATAAAATACTTCCCTGCTGAACCAACAAAG--CAGCAACAAGAAGGGGGTAAAACTGTGAAGTTTGATTGAG

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 11
gtgagtgctttcgtttgttaattttcggct----gttcacatatgtttaaacggat---tccaattcacatt---gttctcatgtttgtaatccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAG--ATTGCTGAAGCTGATCACGATAAG-CTGGAGTAAATGATGA
 | ||   ||  |||  |    |||||| |    | | |    | ||| || || |     | || ||   |      || |      |  |    ||||||||||||| ||||||| |||||||| || || || |||||||||||| ||||     ||      |   ||   |  ||   ||  ||||| | || |    
ttcagaaattgtgttgctcttgtttcggatccatggttatgagtcttttaatgggtgtgctccatccatggttacacacttaaacagtttcttttgtcagGTTATCAGCCGAGTTGGCGATCTTGTTGGTATAAAATACTTCCCTGCGCAGCCCAAGGAGCAGCAACAAGAGGAAAAAACATCAAAACTGGACTGAAAGT---

upper sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 12
------gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacg---gattccaattcacattgttctc--atgtttgtaatccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAG--ATTGCTGAAGCTGATCACGAT-AAGCTGGAGTAAATGATGA
         | ||  | |       |||  ||   ||  |||| |  |||    |   | ||  ||   |  || || |   |  ||     |    ||||||||||||| |||||||||| || |||| ||| ||||| |||||||| |||||    |||  |  |||| ||     ||   | || ||||||| || ||   
tttaataataatgtgtacacacaaaaatactccattga-cacagaattttggtagtgtggttgtaaccaattttcttattggaccttctggtttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGCCCAGGAAGCAACAGCTGGAGGAAGGCAGAGTGAAACTGGAGTGAAAGA---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89193136|gb|CI050434.1|CI050434
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88455345|gb|CI519366.1|CI519366
EST:     CGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: CGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29628852|gb|CB633863.1|CB633863
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88254269|gb|CI352895.1|CI352895
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29671691|gb|CB667966.1|CB667966
EST:     TCTGCATTTTTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86872762|gb|CI341972.1|CI341972
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAACCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTTCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29675002|gb|CB671277.1|CB671277
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86592303|gb|CI250957.1|CI250957
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86822568|gb|CI358068.1|CI358068
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGGCAGAGTTGGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCA-GCAGAGTT-GGTGATCTTGTGGGCATCAAGTACTTCCCTGCGG
EST: gi|86839497|gb|CI339416.1|CI339416
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88967041|gb|CI392003.1|CI392003
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88276818|gb|CI395981.1|CI395981
EST:     GCATTTCTGGCTTCGCACAGCTAGGGAGGACCTGATAAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: GCATTTCT-GCTTCGCACA-CTAGGGAGGACCTGAT-AAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88832997|gb|CI369887.1|CI369887
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29615692|gb|CB620704.1|CB620704
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88993224|gb|CI108852.1|CI108852
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29659061|gb|CB655336.1|CB655336
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86866454|gb|CI343422.1|CI343422
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86415690|gb|CI029701.1|CI029701
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|89183664|gb|CI046229.1|CI046229
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|18385894|gb|BM419093.1|BM419093
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88255224|gb|CI354048.1|CI354048
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|58672271|gb|CK060957.1|CK060957
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86839794|gb|CI343709.1|CI343709
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86430771|gb|CI083194.1|CI083194
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTNATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88276681|gb|CI397483.1|CI397483
EST:     CTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: CTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86903309|gb|CI313672.1|CI313672
EST:     TCTGCATTTCT-CGTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29672757|gb|CB669032.1|CB669032
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29626773|gb|CB631784.1|CB631784
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29615730|gb|CB620742.1|CB620742
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86418690|gb|CI053491.1|CI053491
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|29633292|gb|CB638301.1|CB638301
EST:     TCTGCATTTATGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|94362891|gb|CI053052.1|CI053052
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86869808|gb|CI316536.1|CI316536
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88250356|gb|CI348586.1|CI348586
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88978726|gb|CI385067.1|CI385067
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|58657490|gb|CK046170.1|CK046170
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88199908|gb|CI199758.1|CI199758
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|88270902|gb|CI380202.1|CI380202
EST:     CGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: CGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86494972|gb|CI137605.1|CI137605
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCAT
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCAT
EST: gi|86896076|gb|CI330059.1|CI330059
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
EST: gi|86869334|gb|CI339058.1|CI339058
EST:     TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGAT                         GTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
genomic: TCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 75 (downstream exon)
Score: 15

TGTCACTGTGGCATTCCCTGCCACACCTCTGCTCCTTGCAAGGGCGCGCATCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAGCCCTTGATgtgagtgctt ... atccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatgtttaaacggattccaattcacattgttctcatgtttgtaatccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA
                                              tccactc  CT-rich tract
                                       tttgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgctttcgtttgttaattttcggctgttcacatatgtttaaacggattccaattcacattgttctcatgtttgtaatccactcagGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAGCCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA