1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtattgagcttatcactttgcatcttgcaccatgtttttcaaccaacagtagtgaatccaacgtaaatcatagttcagatggttgcaatatattgctcttgatcctcctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGG
species | Oryza sativa |
transcript | LOC_Os11g14950.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88490827|gb|CI428099.1|CI428099
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88333965|gb|CI645379.1|CI645379
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88851519|gb|CI670959.1|CI670959
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88475569|gb|CI412840.1|CI412840
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88480706|gb|CI417977.1|CI417977
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88283818|gb|CI405264.1|CI405264
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCNTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88476916|gb|CI414187.1|CI414187
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88347292|gb|CI632577.1|CI632577
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88472140|gb|CI409411.1|CI409411
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|33799625|gb|CF325673.1|CF325673
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88331000|gb|CI638408.1|CI638408
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|29637025|gb|CB642034.1|CB642034
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|29642738|gb|CB647745.1|CB647745
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88334143|gb|CI641194.1|CI641194
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCEST: gi|88281252|gb|CI402450.1|CI402450
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
EST: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAG GTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
genomic: ATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGgtttgtattg ... ctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCC
gtaaatcatagttcagatggttgcaatatattgctcttgatcctcctctttgcagGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGG
tcttgat putative branch site (score: 2)
ttgctcttgatcctcc CT-rich tract
aatatatt TA-rich tract