1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...catggcttgtggaatgcacgaggcctgtcttgattaatagtgtaacatttatacattgaagtcccttttacatttttgttgactgttctgtattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAATAAGAGAAGCGGCTGGTTTGTTCAGGCTTTTAAAATCGTTAGAGTGAAG
species | Oryza sativa |
transcript | LOC_Os11g13694.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATG TGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAAEST: gi|88465617|gb|CI522368.1|CI522368
genomic: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGgtgagtgtac ... tattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAA
EST: GCTATTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATG TGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAAEST: gi|29620671|gb|CB625682.1|CB625682
genomic: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGgtgagtgtac ... tattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAA
EST: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATG TGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAAEST: gi|88223292|gb|CI223141.1|CI223141
genomic: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGgtgagtgtac ... tattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAA
EST: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATG TGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAA
genomic: GCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGgtgagtgtac ... tattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAA
catttatacattgaagtcccttttacatttttgttgactgttctgtattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAATAAGAGAAGCGGCTGGTTTGTTCAGGCTTTTAAAATCGTTAGAGTGAAG
tgttgac putative branch site (score: 9)
ttttacatttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggcttgtggaatgcacgaggcctgtcttgattaatagtgtaacatttatacattgaagtcccttttacatttttgttgactgttctgtattttgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAATAAGAGAAGCGGCTGGTTTGTTCAGGCTTTTAAAATCGTTAGAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - gcttgtg
- - - - - -gaatgca
- - - - - - - - - - - -cctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgactg