1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agcaacacaaattcgattagctagcaatatttccaattgcaaagttgggtacgatagtagattgaggcctgctcgtttttcctacttttgtaccatacagGATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTGGGGAAACGCTTACATTATGAACAAGTAGTCAGCCATTTTTACTGTTCAG
species | Oryza sativa |
transcript | LOC_Os11g04200.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGATATGCAG GATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTGEST: gi|58688828|gb|CK077515.1|CK077515
genomic: GAGATATGCAGgtaaattccc ... taccatacagGATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTG
EST: ACAAGCTGAGCGCAAAAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG GATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTGEST: gi|86414261|gb|CI068664.1|CI068664
genomic: ACAAGCTGAGCGCAAAAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaaattccc ... taccatacagGATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTG
EST: ACAAGCTGAGCGCAAAAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG GATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTG
genomic: ACAAGCTGAGCGCAAAAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaaattccc ... taccatacagGATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTG
tgggtacgatagtagattgaggcctgctcgtttttcctacttttgtaccatacagGATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTGGGGAAACGCTTACATTATGAACAAGTAGTCAGCCATTTTTACTGTTCAG
tttttcctacttttgt CT-rich tract
tactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaacacaaattcgattagctagcaatatttccaattgcaaagttgggtacgatagtagattgaggcctgctcgtttttcctacttttgtaccatacagGATCGCATAAGGAGAGGCCAGCCAAGATGCAGAAAGATTAAGTCAATACTGGGGAAACGCTTACATTATGAACAAGTAGTCAGCCATTTTTACTGTTCAG
- caacaca
- - - - - - - - - -gctagca
- - - - - - - - - - - - - - - - - aattgca