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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagcctgaagatagatatgaaaggatgagcctgttctaacagaactgtaaacctgttttgaagaagaaaaggactgactgttgaaaatctgtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG

Basic information

species Oryza sativa
transcript LOC_Os11g04030.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86431076|gb|CI083499.1|CI083499
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88532104|gb|CI461565.1|CI461565
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88520442|gb|CI448096.1|CI448096
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88283253|gb|CI404699.1|CI404699
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88518921|gb|CI446575.1|CI446575
EST:     GGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: GGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88507466|gb|CI434972.1|CI434972
EST:     GTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: GTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88848658|gb|CI087180.1|CI087180
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88219437|gb|CI218997.1|CI218997
EST:     ACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88217007|gb|CI216711.1|CI216711
EST:     CACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: CACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88841567|gb|CI080823.1|CI080823
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88488062|gb|CI425333.1|CI425333
EST:     GGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: GGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|29678071|gb|CB674346.1|CB674346
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTTT                         ANNNNNNNGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|86260630|gb|CI066503.1|CI066503
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88523558|gb|CI451395.1|CI451395
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|86494925|gb|CI137558.1|CI137558
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|29680055|gb|CB676330.1|CB676330
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|86870704|gb|CI323580.1|CI323580
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88531586|gb|CI458682.1|CI458682
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|89186840|gb|CI052253.1|CI052253
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACCAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88253816|gb|CI352442.1|CI352442
EST:     GGCCAATGTCACTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: GGCC-ATGTC-CTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCAC-AAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88842694|gb|CI081950.1|CI081950
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|87006928|gb|CI275236.1|CI275236
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|29644402|gb|CB649409.1|CB649409
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88484549|gb|CI421820.1|CI421820
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88414248|gb|CI533618.1|CI533618
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGG--CAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88537107|gb|CI464921.1|CI464921
EST:     TGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: TGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|87025643|gb|CI250137.1|CI250137
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88486927|gb|CI424198.1|CI424198
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|29679866|gb|CB676141.1|CB676141
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTTT                         ATTTTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88537059|gb|CI464870.1|CI464870
EST:     ACGGCCATNTCCTTGTTCAAGGCTGTTGCACCAGGTGGCGCAGGTGTTCT                         ATTCTCTGGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|88841121|gb|CI080575.1|CI080575
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
EST: gi|89193059|gb|CI050357.1|CI050357
EST:     ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT                         ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
genomic: ACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCTgtaagtacaa ... gtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaacctgttttgaagaagaaaaggactgactgttgaaaatctgtggctgcagATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG
                          gactgac  putative branch site (score: 2)
                                   ttgaaaat  TA-rich tract