1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ataatgagagttgcttactttacttttttccctctgctgattgaaactagatatataacaagagctgacctttttccaattgataaaaactgatgtccagGCTGCAAGCAACTCGTCACAGAATGTGGAGCTCCTGCTGCAGGAGAGCAGCACCCACCCTGATGGTGGGAGCCTGGTGGTGTTCGCGACGGTGGACGTGG
species | Oryza sativa |
transcript | LOC_Os10g42490.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
actagatatataacaagagctgacctttttccaattgataaaaactgatgtccagGCTGCAAGCAACTCGTCACAGAATGTGGAGCTCCTGCTGCAGGAGAGCAGCACCCACCCTGATGGTGGGAGCCTGGTGGTGTTCGCGACGGTGGACGTGG
aactgat putative branch site (score: 3)
aattgataaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgagagttgcttactttacttttttccctctgctgattgaaactagatatataacaagagctgacctttttccaattgataaaaactgatgtccagGCTGCAAGCAACTCGTCACAGAATGTGGAGCTCCTGCTGCAGGAGAGCAGCACCCACCCTGATGGTGGGAGCCTGGTGGTGTTCGCGACGGTGGACGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - -gttgctt
- - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa