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...aggttagcctgttatgacatgatagggttttgagcttgcaccaaaattgttgatgtttgaattatggattgtgtcatatggctgttatgttaactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGCGGGCTGCAATGAGAGTGCCGCTCCCGTCTGCATTTATGACAATATTGC
species | Oryza sativa |
transcript | LOC_Os10g32540.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGEST: gi|29638794|gb|CB643803.1|CB643803
genomic: GTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
EST: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGEST: gi|29643469|gb|CB648476.1|CB648476
genomic: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
EST: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GTGATAGATTTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGEST: gi|58682349|gb|CK071036.1|CK071036
genomic: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
EST: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGEST: gi|88673142|gb|CI727256.1|CI727256
genomic: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
EST: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GCGATAGATCTTGGTGGTACCCCAACEST: gi|25806243|gb|CA762204.1|CA762204
genomic: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAAC
EST: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GTGATAGATCTTGGTGGTACCCCAACGATGGGAGATTGTGCCATTATATTGEST: gi|58588897|gb|CF987205.1|CF987205
genomic: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
EST: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAG GTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
genomic: AGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGgtattcagct ... taactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTG
attgttgatgtttgaattatggattgtgtcatatggctgttatgttaactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGCGGGCTGCAATGAGAGTGCCGCTCCCGTCTGCATTTATGACAATATTGC
tgttaac putative branch site (score: 23)
ctttc CT-rich tract
tttgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttagcctgttatgacatgatagggttttgagcttgcaccaaaattgttgatgtttgaattatggattgtgtcatatggctgttatgttaactttcagGTGATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGCGGGCTGCAATGAGAGTGCCGCTCCCGTCTGCATTTATGACAATATTGC
- - - - -tgttatg
- - - - - - - - acatgat
- - - - - - - - - - - - - - - - -gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgtt