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...ctgaagaattcaagttgaatttctctccggcctttatttctgttggcacactagacaacacattgacaactgcagctaatcgtcgttgagagttttgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACAAATGCCATGGAGTGGCATGAACCCCATGCAAGTTGTGGGTGCAGTTGGT
species | Oryza sativa |
transcript | LOC_Os10g29540.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGGATGGCACCAGAGGTATTAAGGAATGAGCAGTCAAATGAGAA GTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACAEST: gi|29628848|gb|CB633859.1|CB633859
genomic: TGAGTGGATGGCACCAGAGGTATTAAGGAATGAGCAGTCAAATGAGAAgtaagtgatt ... agttttgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACA
EST: CCTGAGTGGATGGCACCAGAGGTATTAAGGAATGAGCAGTCAAATGAGAA GTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACA
genomic: CCTGAGTGGATGGCACCAGAGGTATTAAGGAATGAGCAGTCAAATGAGAAgtaagtgatt ... agttttgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACA
gcacactagacaacacattgacaactgcagctaatcgtcgttgagagttttgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACAAATGCCATGGAGTGGCATGAACCCCATGCAAGTTGTGGGTGCAGTTGGT
agctaat putative branch site (score: 20)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaagaattcaagttgaatttctctccggcctttatttctgttggcacactagacaacacattgacaactgcagctaatcgtcgttgagagttttgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTATGGGAACTAGCAACACTACAAATGCCATGGAGTGGCATGAACCCCATGCAAGTTGTGGGTGCAGTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - ccggcct
- - - - - - - - - - - - - - - - - - - -ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcagc