1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaaaataaaaacttaaattcgttttatacctactgcagtgtcattcgttttctatattgattttacaagtttgcaataaatcgctatactaaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCATTCTCATGAGGTGGTTGGACTTTGTTGAACAATACTATAGGAAGACACC
species | Oryza sativa |
transcript | LOC_Os10g13940.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCAEST: gi|88413751|gb|CI528523.1|CI528523
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
EST: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCAEST: gi|88843663|gb|CI372563.1|CI372563
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
EST: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCAEST: gi|88539108|gb|CI468192.1|CI468192
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
EST: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCAEST: gi|88218938|gb|CI216936.1|CI216936
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
EST: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCAEST: gi|88837921|gb|CI371499.1|CI371499
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
EST: ATAGCTTCGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGCACCATGGACTTTCTATCCAGCTCAACCCATGCAEST: gi|86864508|gb|CI344132.1|CI344132
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
EST: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAG GATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
genomic: ATAGCTTTGACAGTCTACATGAGCCTCCGAATGCTTGCAGGATTCTTAAGgtacaatcag ... aaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCA
cgttttctatattgattttacaagtttgcaataaatcgctatactaaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCATTCTCATGAGGTGGTTGGACTTTGTTGAACAATACTATAGGAAGACACC
tactaaa putative branch site (score: 14)
ttttc CT-rich tract
tatattgattttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaataaaaacttaaattcgttttatacctactgcagtgtcattcgttttctatattgattttacaagtttgcaataaatcgctatactaaattttcagGATAGGGACTGCACGAGGACCATGGACTTTCTATGCAGCTCAACGCATGCATTCTCATGAGGTGGTTGGACTTTGTTGAACAATACTATAGGAAGACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- aaataaa
- - - - - - - - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa