1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cagattccttcagtcatatcaaaactttaaaaatatagtaggaatgtgatcgattcatttattttctccccttactcatgttggtgccccacatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAATGGCAGCAACAGCCTAATTCAGTGACAGTTTTTGTTTCTCCATCTTGT
species | Oryza sativa |
transcript | LOC_Os08g42410.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86540582|gb|CI180788.1|CI180788
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88902548|gb|CI088086.1|CI088086
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCNTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88270089|gb|CI381387.1|CI381387
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: TGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGACCAGTACCAEST: gi|88961781|gb|CI096947.1|CI096947
genomic: TGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGCTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|89191954|gb|CI250895.1|CI250895
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|58608415|gb|CK036448.1|CK036448
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86869997|gb|CI317918.1|CI317918
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGCCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|218478794|gb|FG960305.1|FG960305
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86538601|gb|CI178807.1|CI178807
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88997696|gb|CI390298.1|CI390298
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGTCTGTTCCACAG GTTGAGGACATTTTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|87020958|gb|CI269675.1|CI269675
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88251000|gb|CI349230.1|CI349230
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88837903|gb|CI371481.1|CI371481
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88226935|gb|CI224703.1|CI224703
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88908304|gb|CI090897.1|CI090897
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|89168103|gb|CI109307.1|CI109307
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86538593|gb|CI178799.1|CI178799
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|33824376|gb|CF338005.1|CF338005
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|29614435|gb|CB619448.1|CB619448
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86843428|gb|CI341481.1|CI341481
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88844973|gb|CI022327.1|CI022327
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|89192853|gb|CI050151.1|CI050151
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86538636|gb|CI178842.1|CI178842
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88991256|gb|CI108643.1|CI108643
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|42591826|gb|CK738312.1|CK738312
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|38475005|gb|CF959138.1|CF959138
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88459855|gb|CI524314.1|CI524314
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: GATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|88960452|gb|CI006413.1|CI006413
genomic: GATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86854408|gb|CI256530.1|CI256530
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|89193766|gb|CI116399.1|CI116399
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86427084|gb|CI072181.1|CI072181
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCTTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86823435|gb|CI256396.1|CI256396
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86540610|gb|CI180816.1|CI180816
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCGTGCTACAGAGCAGTACCAEST: gi|88245198|gb|CI245047.1|CI245047
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAEST: gi|86495018|gb|CI137651.1|CI137651
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
gtgatcgattcatttattttctccccttactcatgttggtgccccacatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAATGGCAGCAACAGCCTAATTCAGTGACAGTTTTTGTTTCTCCATCTTGT
cccttac putative branch site (score: 36)
attcatttattttct TA-rich tract