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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtccaattcaaataaatattatttcgtctgttctttcaattttttgcatgattacttatgcaatttcccatgttctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATCAACCCGTACCAATGGCAGGTGTGCCAC

Basic information

species Oryza sativa
transcript LOC_Os08g40880.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613693|gb|CB618706.1|CB618706
EST:     TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAG                         TGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
genomic: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtcca ... tctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
EST: gi|218489540|gb|FG952486.1|FG952486
EST:     TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAG                         TGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
genomic: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtcca ... tctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
EST: gi|27546738|gb|CA764848.2|CA764848
EST:     TGGCTCTTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAG                         TGCCCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG
genomic: TGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGgtattgtcca ... tctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctttcaattttttgcatgattacttatgcaatttcccatgttctttcttagTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATCAACCCGTACCAATGGCAGGTGTGCCAC
                                   tttcccatgttctttc  CT-rich tract
     tttcaatttttt  TA-rich tract