1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gttatgctatgttgaatcagcaatgaaatttctgcacactgtaactttttctttcctttgagatacttattatctctctctatgcccttcggcgctaaagGTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGCTGCTGAACCCTTATATG
species | Oryza sativa |
transcript | LOC_Os08g32630.5 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGAGGTTTTGGAAGCTTGACAAGGCATCTTGGTCGTTTGTCAAATG GTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGCEST: gi|29670151|gb|CB666426.1|CB666426
genomic: TTTTGGAGGTTTTGGAAGCTTGACAAGGCATCTTGGTCGTTTGTCAAATGgtacgactgt ... ggcgctaaagGTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGC
EST: GGTTTTGGAAGC-TGNACAAGGCATCTTGGTCGTTTGTCAAATG GTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGCEST: gi|29677474|gb|CB673749.1|CB673749
genomic: GGTTTTGGAAGCTTG-ACAAGGCATCTTGGTCGTTTGTCAAATGgtacgactgt ... ggcgctaaagGTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGC
EST: GGAGGTTTTGGAAGCTTGACAAGGCATCTTGGTCGTTTGTCAAATG GTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGC
genomic: GGAGGTTTTGGAAGCTTGACAAGGCATCTTGGTCGTTTGTCAAATGgtacgactgt ... ggcgctaaagGTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGC
tttttctttcctttgagatacttattatctctctctatgcccttcggcgctaaagGTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGCTGCTGAACCCTTATATG
cccttcg CT-rich tract
atacttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgctatgttgaatcagcaatgaaatttctgcacactgtaactttttctttcctttgagatacttattatctctctctatgcccttcggcgctaaagGTATATATGAAGCAGTTTCAGGAGATCTTCTGGATGCACGTAGTTTGCAGCTGCTGAACCCTTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT