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...atactgtagttctaatgccaatcttctacctagtatctggtcctgtagtcctgttattcttctgatcttgtcacactaactttatttattcaaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGA
species | Oryza sativa |
transcript | LOC_Os08g20544.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTGTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88828767|gb|CI073637.1|CI073637
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88903570|gb|CI089108.1|CI089108
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGCATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88366661|gb|CI556445.1|CI556445
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|89173078|gb|CI040971.1|CI040971
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88519736|gb|CI447390.1|CI447390
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|86484163|gb|CI126796.1|CI126796
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88229969|gb|CI229845.1|CI229845
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88471949|gb|CI409220.1|CI409220
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: ATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|29632279|gb|CB637288.1|CB637288
genomic: ATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|86435352|gb|CI106585.1|CI106585
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88487066|gb|CI424337.1|CI424337
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88482452|gb|CI419723.1|CI419723
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|58683940|gb|CK072627.1|CK072627
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88994440|gb|CI117592.1|CI117592
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|86880248|gb|CI320914.1|CI320914
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|58667270|gb|CK055956.1|CK055956
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88443429|gb|CI552172.1|CI552172
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|86522202|gb|CI162408.1|CI162408
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|86483091|gb|CI125724.1|CI125724
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|58689663|gb|CK078350.1|CK078350
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88905946|gb|CI089532.1|CI089532
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88958293|gb|CI095812.1|CI095812
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|89163077|gb|CI099967.1|CI099967
genomic: TCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88322491|gb|CI542819.1|CI542819
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: ATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|88956625|gb|CI092821.1|CI092821
genomic: ATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCEST: gi|58679477|gb|CK068164.1|CK068164
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
EST: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAG GATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
genomic: TGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGgtataatgta ... caaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGC
tagtcctgttattcttctgatcttgtcacactaactttatttattcaaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGA
cactaac putative branch site (score: 5)
tttattc putative PPT
actaactttatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactgtagttctaatgccaatcttctacctagtatctggtcctgtagtcctgttattcttctgatcttgtcacactaactttatttattcaaattgcagGATTACATAGGGAGATGCATCTTGACACTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - -ctaatgc
- - - - - - - - - - - - - - - - - - - ggtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acactaa