1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgtcacacacactacaagaacagctttgcaatgttgtcacattttgtaagaatcacatttttcgtgttcgttgatgccttccttacaatgcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGCGGAGCCGAGCGGCAGCATGAGGGACGGCGACGCCGTCGACTGCTGCAA
species | Oryza sativa |
transcript | LOC_Os08g10570.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGEST: gi|86506616|gb|CI149249.1|CI149249
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGEST: gi|32948504|gb|BP185076.1|BP185076
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGEST: gi|89194604|gb|CI117041.1|CI117041
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGEST: gi|18386202|gb|BM419401.1|BM419401
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGATGAGGCGTGCCAGAACGGCATCGGCGTGATCGEST: gi|55409415|gb|CV721791.1|CV721791
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGAEST: gi|18386348|gb|BM419546.1|BM419546
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGA
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGATGAGGCGTGCCAGAACGGCATCGGCGTGATCGEST: gi|86493028|gb|CI135661.1|CI135661
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
EST: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCG CTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
genomic: AGAGGAGGCCAAAGGAGCTGCTTTGGCCAGTGATGCATTCTTCCCATTCGgtaagaacaa ... gcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCG
tgtaagaatcacatttttcgtgttcgttgatgccttccttacaatgcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGCGGAGCCGAGCGGCAGCATGAGGGACGGCGACGCCGTCGACTGCTGCAA
tccttac putative branch site (score: 27)
acattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcacacacactacaagaacagctttgcaatgttgtcacattttgtaagaatcacatttttcgtgttcgttgatgccttccttacaatgcaacgacagCTTGGAACGACGCCGTGGAGGAGGCGTGCCAGAACGGCATCGGCGTGATCGCGGAGCCGAGCGGCAGCATGAGGGACGGCGACGCCGTCGACTGCTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - -acacaca
- - - - - - - - aagaaca
- - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - -atgttgt