Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcttgctacgtttagtaaagcgttgctgcacgaatctcaaagcacctactgaaatgttttgaatttgtgtgtgtgtgtttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA

Basic information

species Oryza sativa
transcript LOC_Os08g08820.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08820.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G130442_T01 (Zea mays), 3'ss of exon 11
-------gtacatgcttgctacgtttagtaaagcgtt-gctgcacgaatctca-----aagcacctactgaaatgttttgaatttg---tgtgtgtgtgtttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGC---------AGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA
        ||||| | ||   |  |   || |  | | ||| ||  ||| | |     ||  |  |||    |    | |||||||    || ||  |||||| | | |||   |         || ||   | ||  |          ||| ||||||||||||||||||||| |||||||||||| |||||||| | | ||                
gtataccttacatacatgtagccatccatacacagctagcttcagtaatttgagtcgaaattaaatacaattacacgtcgaatttgaaccgtttgaatgttttgtagGAGGGAGAAGGGGGACATGCAGCAAGGTTTTGTGGAAATGTTAGTGGGGAGTCAAGAACGCACCTCAGACTCTCCTTGCCGTGTGGTGCTCATACTGAAA------------

upper sequence: LOC_Os08g08820.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G130442_T02 (Zea mays), 3'ss of exon 10
-------gtacatgcttgctacgtttagtaaagcgtt-gctgcacgaatctca-----aagcacctactgaaatgttttgaatttg---tgtgtgtgtgtttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGC---------AGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA
        ||||| | ||   |  |   || |  | | ||| ||  ||| | |     ||  |  |||    |    | |||||||    || ||  |||||| | | |||   |         || ||   | ||  |          ||| ||||||||||||||||||||| |||||||||||| |||||||| | | ||    ||| |       
gtataccttacatacatgtagccatccatacacagctagcttcagtaatttgagtcgaaattaaatacaattacacgtcgaatttgaaccgtttgaatgttttgtaggagGGAGAAGGGGGACATGCAGCAAGGTTTTGTGGAAATGTTAGTGGGGAGTCAAGAACGCACCTCAGACTCTCCTTGCCGTGTGGTGCTCATACTG--AAAGGA-------

upper sequence: LOC_Os08g08820.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G118063_T03 (Zea mays), 3'ss of exon 11
--gtacatgcttgctacgtt---tagtaaagc--gttgctgcacgaatctcaaagcacctactgaaatgttttgaatttgtgtgtgtgtgtttttttgcagGAGCAGCAAAA-TTTTGGAGTTTG-----ATTCAGCAGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA
  | | |||||   |  |||   || |   ||  |    | |||  | ||  | | |||   ||||   ||||   ||| | | |||  |       | ||| |  |   |  |||||| | | |     ||| | |||| ||||||||||||||||||||| ||||||||||||||||||||| ||                    
gtgaatatgctgcttcagttccttaattgggctcgaaaatacacctagcttgatgaaccgtttgaatgtttttttttttttttttgta-gAGCGAGAGGAGGGGTGGTGCAGCTTTTGGGGATCGGAGATATTTATCAGTGGGGAGTCAAGAACGCACCTCAGACTCTCCTTGCCATGTGGTGCTCTGAT-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86513292|gb|CI155925.1|CI155925
EST:     CAGTAGTAGCACCGGCTTCAACCCAATATGATCACGAACAATGTTCCAAG                         GAGCAGCCAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86521446|gb|CI161652.1|CI161652
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519305|gb|CI159511.1|CI159511
EST:     CAGTAGTAGCACCGGCTTCAACCCAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88234062|gb|CI233911.1|CI233911
EST:     ATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: ATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88231963|gb|CI231812.1|CI231812
EST:     CAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|58694339|gb|CK083026.1|CK083026
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86518691|gb|CI158897.1|CI158897
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88231008|gb|CI230857.1|CI230857
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|89185959|gb|CI047828.1|CI047828
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88229369|gb|CI229245.1|CI229245
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|87035984|gb|CI190606.1|CI190606
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|58680209|gb|CK068896.1|CK068896
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88828893|gb|CI073763.1|CI073763
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86520447|gb|CI160653.1|CI160653
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86517565|gb|CI157771.1|CI157771
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88967288|gb|CI002482.1|CI002482
EST:     AGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: AGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|29615393|gb|CB620405.1|CB620405
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86520950|gb|CI161156.1|CI161156
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86517969|gb|CI158175.1|CI158175
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86521661|gb|CI161867.1|CI161867
EST:     CGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88230619|gb|CI230495.1|CI230495
EST:     ATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: ATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|89193067|gb|CI050365.1|CI050365
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88230724|gb|CI230600.1|CI230600
EST:     GAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: GAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88232190|gb|CI230648.1|CI230648
EST:     GGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: GGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88828925|gb|CI073795.1|CI073795
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGGACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88229661|gb|CI229537.1|CI229537
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88232198|gb|CI230656.1|CI230656
EST:     CAGTAGTAGCACCGGCTTCAACCATATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86477531|gb|CI120164.1|CI120164
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86478064|gb|CI120697.1|CI120697
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86521025|gb|CI161231.1|CI161231
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86841333|gb|CI336367.1|CI336367
EST:     TATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: TATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519224|gb|CI159430.1|CI159430
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86522023|gb|CI162229.1|CI162229
EST:     ATGATCACGAACAATGTTCCAAG                         GAGCAGCGAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: ATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86513867|gb|CI156500.1|CI156500
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|58684465|gb|CK073152.1|CK073152
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86482650|gb|CI125283.1|CI125283
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86518765|gb|CI158971.1|CI158971
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88229242|gb|CI229118.1|CI229118
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|87017767|gb|CI273789.1|CI273789
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86514226|gb|CI156859.1|CI156859
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519761|gb|CI159967.1|CI159967
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86513673|gb|CI156306.1|CI156306
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|29615071|gb|CB620084.1|CB620084
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86520889|gb|CI161095.1|CI161095
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|87038569|gb|CI193191.1|CI193191
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88226275|gb|CI226191.1|CI226191
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATT---CAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88229711|gb|CI229587.1|CI229587
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88230261|gb|CI230137.1|CI230137
EST:     AATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: AATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86479864|gb|CI122497.1|CI122497
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86478266|gb|CI120899.1|CI120899
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88229381|gb|CI229257.1|CI229257
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88224400|gb|CI224249.1|CI224249
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86518704|gb|CI158910.1|CI158910
EST:     CAGTAGTAGCACCGGCTTCAACCCAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519187|gb|CI159393.1|CI159393
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCGAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|29667381|gb|CB663656.1|CB663656
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88231166|gb|CI231015.1|CI231015
EST:     GGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: GGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|89162178|gb|CI103714.1|CI103714
EST:     AAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: AAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519981|gb|CI160187.1|CI160187
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|87011595|gb|CI279504.1|CI279504
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88249630|gb|CI249479.1|CI249479
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86513869|gb|CI156502.1|CI156502
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86433486|gb|CI093829.1|CI093829
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88230346|gb|CI230222.1|CI230222
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86827432|gb|CI272826.1|CI272826
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAG--AAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|29655952|gb|CB652227.1|CB652227
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86514514|gb|CI157147.1|CI157147
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|87027287|gb|CI269962.1|CI269962
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88241104|gb|CI240953.1|CI240953
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86522042|gb|CI162248.1|CI162248
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86513845|gb|CI156478.1|CI156478
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86521796|gb|CI162002.1|CI162002
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88232341|gb|CI232190.1|CI232190
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86521389|gb|CI161595.1|CI161595
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86436833|gb|CI118555.1|CI118555
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86827809|gb|CI272985.1|CI272985
EST:     CAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|58685335|gb|CK074022.1|CK074022
EST:     CACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88231343|gb|CI231192.1|CI231192
EST:     CAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86895556|gb|CI331357.1|CI331357
EST:     TTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCACTAGGGAGTCAAGAACCCAC
genomic: TTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|88231399|gb|CI231248.1|CI231248
EST:     ATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGTACGCAC
genomic: ATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86520609|gb|CI160815.1|CI160815
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519146|gb|CI159352.1|CI159352
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86518580|gb|CI158786.1|CI158786
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|58675237|gb|CK063924.1|CK063924
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86437748|gb|CI119668.1|CI119668
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86514438|gb|CI157071.1|CI157071
EST:     TAGTAGCACCGGCTTCAACCCTATTTTTGTTTCGCGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: TAGTAGCACCGGCTTCAA-CC-AAATATG-ATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|29637185|gb|CB642194.1|CB642194
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86514309|gb|CI156942.1|CI156942
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86513707|gb|CI156340.1|CI156340
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86482679|gb|CI125312.1|CI125312
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|87027602|gb|CI272367.1|CI272367
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519041|gb|CI159247.1|CI159247
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86481452|gb|CI124085.1|CI124085
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86519758|gb|CI159964.1|CI159964
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
EST: gi|86513913|gb|CI156546.1|CI156546
EST:     CAGTAGTAGCACCGGCTTCAACCAAATATGGTCACGAACAATGTTCCAAG                         GAGCAGCAAAATTTTGGAGCTTGATTCAGCAGTAGGGAGTCAAGAACGCAC
genomic: CAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 41

CCTGCACGGTGGAGCGCATCAAGGCCGCCGTCTGCAGGGACAGCAACCCTCAGTAGTAGCACCGGCTTCAACCAAATATGATCACGAACAATGTTCCAAGgtacatgctt ... ttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcaaagcacctactgaaatgttttgaatttgtgtgtgtgtgtttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA
                                          tgttttttt  CT-rich tract
                  aaatgttttgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatgcttgctacgtttagtaaagcgttgctgcacgaatctcaaagcacctactgaaatgttttgaatttgtgtgtgtgtgtttttttgcagGAGCAGCAAAATTTTGGAGTTTGATTCAGCAGTAGGGAGTCAAGAACGCACCTCAAACTCTCCTTGCCATGTGGTGCCCTTGCTAGTGAAGAATTTGCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA