1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattttcactcggaaccaagtaaatttcctacctccaacataatccactctcgccaccactaacatcagaaactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG
species | Oryza sativa |
transcript | LOC_Os08g08200.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCCCGCATTTGEST: gi|86437177|gb|CI118899.1|CI118899
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88514357|gb|CI441863.1|CI441863
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|86413070|gb|CI067475.1|CI067475
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88508690|gb|CI436196.1|CI436196
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTTTCACAGGATGAATGGGAGGTAGCCTATCTTTACCTCGCATTTGEST: gi|58687919|gb|CK076606.1|CK076606
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|86426409|gb|CI071506.1|CI071506
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88542316|gb|CI471638.1|CI471638
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: GGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTNEST: gi|88834373|gb|CI077656.1|CI077656
genomic: GGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|89175372|gb|CI042393.1|CI042393
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCCAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|86428518|gb|CI075199.1|CI075199
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|86541036|gb|CI181242.1|CI181242
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88516881|gb|CI444461.1|CI444461
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|87027891|gb|CI276247.1|CI276247
genomic: TCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|86433729|gb|CI094072.1|CI094072
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88969123|gb|CI099074.1|CI099074
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88199436|gb|CI199286.1|CI199286
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATTCGGAGGCTGGGTGCCCTAGGTGGTGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88518293|gb|CI445947.1|CI445947
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTTTACCTCGCATTTGEST: gi|29689085|gb|CB685360.1|CB685360
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|86854764|gb|CI259050.1|CI259050
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|88971622|gb|CI388867.1|CI388867
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGEST: gi|25801957|gb|CA757918.1|CA757918
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
EST: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
genomic: TGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAgtaattttca ... aactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTG
ttcctacctccaacataatccactctcgccaccactaacatcagaaactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG
cactaac putative branch site (score: 26)
aacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcactcggaaccaagtaaatttcctacctccaacataatccactctcgccaccactaacatcagaaactttgcagGTACACTGTCACAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG