1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatagttgtttacagttatcatcctgagattctttcctgagtttgtctcacaatgcatttacactgacgttccctcattttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGG
species | Oryza sativa |
transcript | LOC_Os08g07960.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86496217|gb|CI138850.1|CI138850
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88218075|gb|CI217924.1|CI217924
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACTACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86494783|gb|CI137416.1|CI137416
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86433522|gb|CI093865.1|CI093865
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|33805337|gb|CF328546.1|CF328546
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|66920288|gb|CX107136.1|CX107136
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86498360|gb|CI140993.1|CI140993
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|27554584|gb|CA998484.1|CA998484
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: CTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88970906|gb|CI387047.1|CI387047
genomic: CTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: CATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCCCAACAAGTAGAAAGTGATTAEST: gi|86889251|gb|CI315862.1|CI315862
genomic: CATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: GCAAAGACATCCATCTATCTTCACAGTCCGCAG G-ATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88828754|gb|CI073624.1|CI073624
genomic: GCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCGATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86597807|gb|CI276593.1|CI276593
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88962552|gb|CI097704.1|CI097704
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCGATCGATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86421137|gb|CI057126.1|CI057126
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86503924|gb|CI146557.1|CI146557
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88243189|gb|CI244311.1|CI244311
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88849154|gb|CI087676.1|CI087676
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: TCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|33805339|gb|CF328547.1|CF328547
genomic: TCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86434209|gb|CI094552.1|CI094552
genomic: ACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCTATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86494924|gb|CI137557.1|CI137557
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88849422|gb|CI089330.1|CI089330
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: CTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86498473|gb|CI141106.1|CI141106
genomic: CTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88222012|gb|CI221968.1|CI221968
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86495339|gb|CI137972.1|CI137972
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86504575|gb|CI147208.1|CI147208
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|88228888|gb|CI226739.1|CI226739
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86492322|gb|CI134955.1|CI134955
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: CCACTGCAAAGACATCCATCGATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86489810|gb|CI132443.1|CI132443
genomic: CCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|87007439|gb|CI279110.1|CI279110
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86597966|gb|CI278356.1|CI278356
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86428049|gb|CI073146.1|CI073146
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCTATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|87015853|gb|CI279605.1|CI279605
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|89165615|gb|CI102705.1|CI102705
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCGCAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|89198870|gb|CI003607.1|CI003607
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86431778|gb|CI085389.1|CI085389
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: TTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTAEST: gi|86494277|gb|CI136910.1|CI136910
genomic: TTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
EST: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG GAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
genomic: ACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGgtaatagttg ... ttttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTA
tttcctgagtttgtctcacaatgcatttacactgacgttccctcattttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGG
cactgac putative branch site (score: 1)
cgttccctcatttt CT-rich tract
attttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagttgtttacagttatcatcctgagattctttcctgagtttgtctcacaatgcatttacactgacgttccctcattttgaatagGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA