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...ctatgaaataacactgctgctcttagtatgttcgcatttttgtgcaaaatttgctaccttctaactaaagttcaagatattaatattttcttccttgcagGAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCATCCTAAGCATTCTCGAGTAGAAGATATGGATCAGTATAGTGGAGACGAAT
species | Oryza sativa |
transcript | LOC_Os08g06070.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAACAGCTCATGGTGGTATGATGGAACATGGAGAATCTTCTAGCATGCAT GAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCATEST: gi|88907409|gb|CI090203.1|CI090203
genomic: GAACAGCTCATGGTGGTATGATGGAACATGGAGAATCTTCTAGCATGCATgtacgacttg ... ttccttgcagGAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCAT
EST: GAACAGCTCATGGTGGTATGATGGAACATGGAGAATCTTCTAGCATGCAT GAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCAT
genomic: GAACAGCTCATGGTGGTATGATGGAACATGGAGAATCTTCTAGCATGCATgtacgacttg ... ttccttgcagGAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCAT
aaaatttgctaccttctaactaaagttcaagatattaatattttcttccttgcagGAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCATCCTAAGCATTCTCGAGTAGAAGATATGGATCAGTATAGTGGAGACGAAT
tattttcttccttgc CT-rich tract
taactaaagttcaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatgaaataacactgctgctcttagtatgttcgcatttttgtgcaaaatttgctaccttctaactaaagttcaagatattaatattttcttccttgcagGAGAATTTGAAGAGACAAAGATCTTCGGTTGATGATGATCTCTATGACCATCCTAAGCATTCTCGAGTAGAAGATATGGATCAGTATAGTGGAGACGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - aataaca
- - - - - - - tgctgct
- - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa