1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taacaagtatatagggactgggtagcacatactgcatcatttctggtgacaaacttgtaaaaaaaaaaaagaaaaatcaataacttgaatattaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAATGGATGCGGTCAGCCTTGATGCCTTTGCCACTGCCGCAGTCTATGGTGA
species | Oryza sativa |
transcript | LOC_Os07g48200.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAG ATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAAEST: gi|38469181|gb|CF953312.1|CF953312
genomic: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAGgtatccatgc ... attaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAA
EST: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAG ATATAAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAAEST: gi|58689987|gb|CK078674.1|CK078674
genomic: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAGgtatccatgc ... attaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAA
EST: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAG ATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAAEST: gi|51946086|gb|CV152427.1|CV152427
genomic: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAGgtatccatgc ... attaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAA
EST: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAG ATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAAEST: gi|58694791|gb|CK083478.1|CK083478
genomic: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAGgtatccatgc ... attaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAA
EST: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAG ATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAA
genomic: TGAAGAATTAACCCCCAAAGAATTGCACATTGTTCTTCAGCAATACGAAGgtatccatgc ... attaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAA
gtgacaaacttgtaaaaaaaaaaaagaaaaatcaataacttgaatattaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAATGGATGCGGTCAGCCTTGATGCCTTTGCCACTGCCGCAGTCTATGGTGA
caataac putative branch site (score: 2)
ttgtaaaaaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacaagtatatagggactgggtagcacatactgcatcatttctggtgacaaacttgtaaaaaaaaaaaagaaaaatcaataacttgaatattaccacagATATGAGGAGGCGAAGGAACAGCTTTGGTTTTAAGCAGAACATCCCCGAAATGGATGCGGTCAGCCTTGATGCCTTTGCCACTGCCGCAGTCTATGGTGA
- - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - ctggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgaat