1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaccgcatctttcagatccacttgattcttggaatgtggactgctgtcacctgattcttggaatgtgtgtcacctgcgtactccctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGAATCCAAGAGGGGATGTGACCCCTCCTAGGTTGAGTTCTTTCGGGATGGA
species | Oryza sativa |
transcript | LOC_Os07g45350.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAAGCTGTGAGAACTTTCCGCCATTGACAGCACTTCGATGCAAAATCTG AAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGAEST: gi|88478728|gb|CI415999.1|CI415999
genomic: CCAAGCTGTGAGAACTTTCCGCCATTGACAGCACTTCGATGCAAAATCTGgtaccgcatc ... ctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGA
EST: TCCGCCATGGACAGCACTTCGATGCAAAATCTG -GAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGAEST: gi|87034555|gb|CI189179.1|CI189179
genomic: TCCGCCATTGACAGCACTTCGATGCAAAATCTGgtaccgcatc ... ctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGA
EST: CCAAGCTGTGAGAACTTTCCGCCATTGACAGCACTTCGATGCAAAATCTG AAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGAEST: gi|88504271|gb|CI431777.1|CI431777
genomic: CCAAGCTGTGAGAACTTTCCGCCATTGACAGCACTTCGATGCAAAATCTGgtaccgcatc ... ctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGA
EST: GTGAGAAC-TTCCGCCATTGACAGCACTTCGATGCAAAATCTG AAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGA
genomic: GTGAGAACTTTCCGCCATTGACAGCACTTCGATGCAAAATCTGgtaccgcatc ... ctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGA
actgctgtcacctgattcttggaatgtgtgtcacctgcgtactccctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGAATCCAAGAGGGGATGTGACCCCTCCTAGGTTGAGTTCTTTCGGGATGGA
acctgat putative branch site (score: 4)
tactccctctgtcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgcatctttcagatccacttgattcttggaatgtggactgctgtcacctgattcttggaatgtgtgtcacctgcgtactccctctgtccagAAAAACTCAACCGAGGGGATGACCCCTCCTAGTACAACGAATCTGGACAGAATCCAAGAGGGGATGTGACCCCTCCTAGGTTGAGTTCTTTCGGGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA