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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatataaaattcaagaaacaattcacacctttggtactttcaaatcatcatcctggctactgcatatttcagtcatcaccatttcttgttactttcagGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAA

Basic information

species Oryza sativa
transcript LOC_Os07g42626.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g42626.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G121573_T01 (Zea mays), 3'ss of exon 11
---------------------------------------attatataaaattcaagaaacaattca---cacctttggtactttcaaatcatcatcctggctactgcatatttcagtcatcaccatttc--ttgttactttcagGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAA
                                         |||   |  || | || |   ||||   ||  ||    | |||| ||| ||  ||    ||| |||  ||     |||||||  | ||  | || | ||||||||| ||||||| |||||||| || ||||||| ||| ||  |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||
gtatatcactaattcttacatgttcaaagcaattattaggctattatatcttgatgatatgcttcatttcagtttcacgattttcgaattatggtctaaactattgcg-at----atcatcactttctcgatggtaaatttcagGTCATGGCTGTAAAGAAAATAAACTTCTCTGTATTTCCAAGCCATCCTTCAGATTTGTTCATTGAGTTGGTTGCAAACATTTCAATGTTAAATCATCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcatcctggctactgcatatttcagtcatcaccatttcttgttactttcagGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAA
                                      tttcttgttactttc  CT-rich tract
                    atatttca  TA-rich tract