1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtagaaaattttggcttggttaagacctgtgttgaggctgggtaggataggtgtgtttagaatgttttgatttttatttcatgcatactgcttgtcaattgcagGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTGTCATCGATAACAGGGAAATATCGCAGTGGATTGTCAATTGATGGACTCA
species | Oryza sativa |
transcript | LOC_Os07g31460.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAG GTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTGEST: gi|29678551|gb|CB674826.1|CB674826
genomic: AAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAGgtagaaaatt ... tcaattgcagGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTG
EST: AAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAG GTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTGEST: gi|58696150|gb|CK084837.1|CK084837
genomic: AAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAGgtagaaaatt ... tcaattgcagGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTG
EST: AAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAG GTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTG
genomic: AAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAGgtagaaaatt ... tcaattgcagGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTG
ggtgtgtttagaatgttttgatttttatttcatgcatactgcttgtcaattgcagGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTGTCATCGATAACAGGGAAATATCGCAGTGGATTGTCAATTGATGGACTCA
ttttgat putative branch site (score: 22)
tttagaatgttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaaattttggcttggttaagacctgtgttgaggctgggtaggataggtgtgtttagaatgttttgatttttatttcatgcatactgcttgtcaattgcagGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTGTCATCGATAACAGGGAAATATCGCAGTGGATTGTCAATTGATGGACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA