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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtatttgttagattggtcctctgttctatttgtttatcggttgctcatttgttctatgataaagGAGGGAAGCATCATCGTTTCAAGCGAGGGTACAAGAATGTAATAGATGAGGCTATTCGTCTG

Basic information

species Oryza sativa
transcript LOC_Os07g26610.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26610.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G069676_T02 (Zea mays), 3'ss of exon 11
gtaggtatttgttagattg--gtcctctgttctatttgtttatcggttgctcatttgttctatgata--aagGAGGGAAGCATCATCGTTTCAAGCGAGGGTACAAGAATGTAATAGATGAGGCTATTCGTCTG
||| ||| |  | | ||||  || || ||||  | |   | |||  || || || | || | |  |   |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
gtatgtactgttcacattgtcgtgctttgtttgagtaaataatcatttacttatctatttttttttcttaagGAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGCTATTCGTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613465|gb|CB618478.1|CB618478
EST:     AGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTG                         GAGGGAAGCATCATCGTTTCAAGCGAGGGTAC
genomic: AGATAGCGTGACTTCTGATGGGCTGACTACATTTATTGAAAATAAACTTGgtaggtattt ... tatgataaagGAGGGAAGCATCATCGTTTCAAGCGAGGGTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattggtcctctgttctatttgtttatcggttgctcatttgttctatgataaagGAGGGAAGCATCATCGTTTCAAGCGAGGGTACAAGAATGTAATAGATGAGGCTATTCGTCTG
                                      tttgttct  CT-rich tract
              ttctatttgtttat  TA-rich tract