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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcaatcatacgttctttctgttaagtcgttttttatgcgatgttattgatctgatagtgttttaacttcaattctgtccagGTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680453|gb|CK069140.1|CK069140
EST:     CGGCTCCAGGGCTAAGTTACACCGATGTTCCCAATGCACAAATAAGAAAG                         GTTACGTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTA
genomic: CGGCTCCAGGGCTAAGTTACACCGATGTTCCCAATGCACAAATAAGAAAGgtaatttcaa ... ttctgtccagGTTAC-TGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTA
EST: gi|58652754|gb|CK041434.1|CK041434
EST:     CGGCTCCAGCGCTAAGTTACACCGATGTTCCCAATGCACAAATAAGAAAG                         GTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTAC
genomic: CGGCTCCAGGGCTAAGTTACACCGATGTTCCCAATGCACAAATAAGAAAGgtaatttcaa ... ttctgtccagGTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTAC
EST: gi|55410697|gb|CV723073.1|CV723073
EST:     CGGCTCCAGGGCTAAGTTACACCGATGTTCCCAATGCACAAATAAGAAAG                         GTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTAC
genomic: CGGCTCCAGGGCTAAGTTACACCGATGTTCCCAATGCACAAATAAGAAAGgtaatttcaa ... ttctgtccagGTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttttttatgcgatgttattgatctgatagtgttttaacttcaattctgtccagGTTACTGCGAACCGCCTGCTAAGCTCTAAGCAAACAATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA
                                 ttttaac  putative branch site (score: 2)
                                             ttctgtcc  putative PPT
                                 ttttaacttcaatt  TA-rich tract