1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacacctcttcaaatacctgtgaaacattactcttttcctattcacgtgagaattgatttatttcctataagattccaatccttaattggtgcatagcataagatcgtaatttattcaaccagttcatgcttctcatatatgtattcttacattgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTGACAGAGATGGAAAAATAAGCCTAGATGAATTTCGCAGGCTCCTGAAAA
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88420475|gb|CI562109.1|CI562109
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88481189|gb|CI418460.1|CI418460
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88460899|gb|CI553035.1|CI553035
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATEST: gi|88506022|gb|CI433528.1|CI433528
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAA-GGTTCTATTGATCCCCTCCTGGAGGAGGCTGACAT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88828577|gb|CI073447.1|CI073447
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88519118|gb|CI446772.1|CI446772
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86486671|gb|CI129304.1|CI129304
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|2796651|gb|AA749945.1|AA749945
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88475732|gb|CI413003.1|CI413003
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88265315|gb|CI369089.1|CI369089
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88507876|gb|CI435382.1|CI435382
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|29676797|gb|CB673072.1|CB673072
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88297476|gb|CI547954.1|CI547954
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86435246|gb|CI106479.1|CI106479
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88226341|gb|CI226257.1|CI226257
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: TGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|29628582|gb|CB633593.1|CB633593
genomic: TGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86837314|gb|CI347767.1|CI347767
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86845047|gb|CI341011.1|CI341011
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86828581|gb|CI278671.1|CI278671
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88266882|gb|CI368658.1|CI368658
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86497200|gb|CI139833.1|CI139833
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88289399|gb|CI555761.1|CI555761
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86838914|gb|CI330335.1|CI330335
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: ATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAAGCTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATEST: gi|88485594|gb|CI422865.1|CI422865
genomic: ATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAA-CTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACAT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88225096|gb|CI225012.1|CI225012
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88489201|gb|CI426473.1|CI426473
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|29682050|gb|CB678325.1|CB678325
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATGTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86433426|gb|CI093769.1|CI093769
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|89166259|gb|CI103349.1|CI103349
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88261094|gb|CI364670.1|CI364670
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88439958|gb|CI543875.1|CI543875
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88511463|gb|CI438969.1|CI438969
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88280800|gb|CI400395.1|CI400395
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: TGAACTGAGAATG CCAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88275297|gb|CI395901.1|CI395901
genomic: TGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: TTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|88449707|gb|CI539082.1|CI539082
genomic: TTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTEST: gi|86882883|gb|CI314184.1|CI314184
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
EST: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATG CAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
genomic: AATTTGATGTTGACGGAGATGGCTATATCACATCTGATGAACTGAGAATGgtacacctct ... ttgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATT
taatttattcaaccagttcatgcttctcatatatgtattcttacattgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTGACAGAGATGGAAAAATAAGCCTAGATGAATTTCGCAGGCTCCTGAAAA
ttcttac putative branch site (score: 2)
atatatgtattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacctcttcaaatacctgtgaaacattactcttttcctattcacgtgagaattgatttatttcctataagattccaatccttaattggtgcatagcataagatcgtaatttattcaaccagttcatgcttctcatatatgtattcttacattgtctgcagCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACATTGACAGAGATGGAAAAATAAGCCTAGATGAATTTCGCAGGCTCCTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA