1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttaagcaactgaaatattctcctttgctgaactgccatcactcgtggttattgtggatgtaatttgcttaccattgattatcaatgtccttgttaacagGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT
species | Oryza sativa |
transcript | LOC_Os07g14270.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAG GAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATEST: gi|88980664|gb|CI022377.1|CI022377
genomic: GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGgtaaattcct ... ttgttaacagGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT
EST: GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAG GAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT
genomic: GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGgtaaattcct ... ttgttaacagGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT
tggttattgtggatgtaatttgcttaccattgattatcaatgtccttgttaacagGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT
tccttgtt CT-rich tract
atgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaagcaactgaaatattctcctttgctgaactgccatcactcgtggttattgtggatgtaatttgcttaccattgattatcaatgtccttgttaacagGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -gcaactg
- - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - -tgccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatg