1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagatttgcatccgttcttcctccatgttctatattttccttttgggcttgatctaaacctcaacaacatttatatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATGCAGAGGATGGCAAGGATTCTGATGATGAGAAGCAT
species | Oryza sativa |
transcript | LOC_Os07g14270.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGCTNCCAAGGCCGGTGAGGACGATGATGATTTGGAT NACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88414240|gb|CI533610.1|CI533610
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|86483068|gb|CI125701.1|CI125701
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88452650|gb|CI560700.1|CI560700
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88292070|gb|CI534864.1|CI534864
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: GAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|6012782|gb|AU078599.1|AU078599
genomic: GAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: TGCCAAGNCCGGTNAGNACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88440289|gb|CI549170.1|CI549170
genomic: TGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88465585|gb|CI522336.1|CI522336
genomic: AAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: CTTGTTAACAGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88449181|gb|CI560642.1|CI560642
genomic: CTTGTTAACAGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88568201|gb|CI498918.1|CI498918
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCC-GTNGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88454503|gb|CI509276.1|CI509276
genomic: AGGAAGCTGCCAAGGCCGGT-GAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTT-GAT GACGAGGAATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAEST: gi|27548814|gb|CA766773.2|CA766773
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGG-ATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGA
EST: CTTGTTAACAGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88321325|gb|CI535277.1|CI535277
genomic: CTTGTTAACAGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88411446|gb|CI518970.1|CI518970
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTNCCAAGNCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88321082|gb|CI530434.1|CI530434
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGACCGATGAGAAGGCTGACTCTGATEST: gi|88382478|gb|CI535686.1|CI535686
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGNTGAGGACGATNATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTNACTCTGATEST: gi|88568525|gb|CI499242.1|CI499242
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCC-GTGGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88385180|gb|CI561836.1|CI561836
genomic: AGGAAGCTGCCAAGGCCGGT-GAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88289781|gb|CI525113.1|CI525113
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATNATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|27546441|gb|CA764750.2|CA764750
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88462066|gb|CI504564.1|CI504564
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGCCCGGTGA-GACGANTGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88567345|gb|CI498062.1|CI498062
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGA-TGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88565653|gb|CI496370.1|CI496370
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATNCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88455051|gb|CI516689.1|CI516689
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|86489339|gb|CI131972.1|CI131972
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88843453|gb|CI372353.1|CI372353
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTTCCAAGGCC-CTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88416544|gb|CI543445.1|CI543445
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: CTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88459366|gb|CI517044.1|CI517044
genomic: CTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT G-CGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88291285|gb|CI529875.1|CI529875
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGGTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGNCCGATGAGAAGGCTGACTCTGATEST: gi|89194645|gb|CI117082.1|CI117082
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: CTTGTTAACAGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88435640|gb|CI506740.1|CI506740
genomic: CTTGTTAACAGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATNCTGAGGATGAGGACAAGGCCGATGAGAAGGCTNACTCTGATEST: gi|88295304|gb|CI525457.1|CI525457
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|86825684|gb|CI361826.1|CI361826
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGTCAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|3107721|gb|D43461.1|D43461
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: GGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|86436309|gb|CI118031.1|CI118031
genomic: GGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88220398|gb|CI219958.1|CI219958
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88972109|gb|CI018557.1|CI018557
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|88256201|gb|CI358589.1|CI358589
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATEST: gi|2442937|gb|C74708.1|C74708
genomic: AGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
EST: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGAT GACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
genomic: AGGAAGCTGCCAAGGCCGGTGAGGACGATGATGATTTGGATgtaagatttg ... tatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGAT
tctatattttccttttgggcttgatctaaacctcaacaacatttatatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATGCAGAGGATGGCAAGGATTCTGATGATGAGAAGCAT
atctaaa putative branch site (score: 3)
aacaacatttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttgcatccgttcttcctccatgttctatattttccttttgggcttgatctaaacctcaacaacatttatatttcacagGACGAGGATGCTGAGGATGAGGACAAGGCCGATGAGAAGGCTGACTCTGATGCAGAGGATGGCAAGGATTCTGATGATGAGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC