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...agcttacttggtgactagtgtagtagaactgttgaatttcatgcatcaaattgataactgttgcaattaaaatcaccgtgtgctactacttcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATAATTAGCAAGGTTCAAAAGCAG
species | Oryza sativa |
transcript | LOC_Os07g10490.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAATCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|300215694|gb|HO088320.1|HO088320
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|29629811|gb|CB634820.1|CB634820
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|29675444|gb|CB671719.1|CB671719
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|29683969|gb|CB680244.1|CB680244
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: GGACAAGGTTCCTTGCCT-CT AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAEST: gi|29656822|gb|CB653097.1|CB653097
genomic: GGACAAGGTTCCTTG-ATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGA
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|58685253|gb|CK073940.1|CK073940
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|29675446|gb|CB671721.1|CB671721
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|4714783|gb|AU055900.1|AU055900
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATEST: gi|8956710|gb|BE230513.1|BE230513
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
EST: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAGGGTTCCTTGATCCA AGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
genomic: CTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctac ... tcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGAT
tcaaattgataactgttgcaattaaaatcaccgtgtgctactacttcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATAATTAGCAAGGTTCAAAAGCAG
tgataac putative branch site (score: 72)
cttcattt putative PPT
aattaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttacttggtgactagtgtagtagaactgttgaatttcatgcatcaaattgataactgttgcaattaaaatcaccgtgtgctactacttcatttgtagAGCTGTGCTAACCCCTGGCGATCCTTACATGCCATTGCCGAATGAGGAGATAATTAGCAAGGTTCAAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - cttggtg
- - - - - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctact