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gtttgtccagtgatctaaaaccatttctgcagctgatctcaactcgacttatcattcacattgttgattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
species | Oryza sativa |
transcript | LOC_Os07g10130.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATGEST: gi|87028062|gb|CI257222.1|CI257222
genomic: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
EST: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCGAAAAGGAACCCTGCTATGEST: gi|88525478|gb|CI453934.1|CI453934
genomic: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
EST: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATGEST: gi|88519441|gb|CI447095.1|CI447095
genomic: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
EST: CTGCAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATGEST: gi|88515019|gb|CI442673.1|CI442673
genomic: CTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
EST: CAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATGEST: gi|218505007|gb|FG953269.1|FG953269
genomic: CAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
EST: GTGAATGCAATAAAGGAGACCTGCACATCATCCGGTTTGCTGAAGATAAG GGGATATGACTCGGATAGGCCAAAAAGGAACCCTGCTATEST: gi|88849994|gb|CI091289.1|CI091289
genomic: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTAT
EST: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCAAAAGGGAACCCTGCTATGEST: gi|29615456|gb|CB620468.1|CB620468
genomic: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
EST: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAG GGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
genomic: GTGAATGCAATAAAGGAGACCTGCAAATCATCCGGTTTGCTGAAGATAAGgtttgtccag ... gattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
ccatttctgcagctgatctcaactcgacttatcattcacattgttgattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
tgttgat putative branch site (score: 14)
ttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccagtgatctaaaaccatttctgcagctgatctcaactcgacttatcattcacattgttgattctacagGGGATATGACTTGGATAGGCCAAAAAGGAACCCTGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA