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...catgactctttttatcagagtttctgacctagcatgtggaaacttgagttctaagatgattcgttttatattgtaacttcttgcatgggcatcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTGGTGGTGTTGGAGACAATGACTACATATTTGCTTTTAAGCATGTGGTGC
species | Oryza sativa |
transcript | LOC_Os07g06980.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAG GTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTEST: gi|86498642|gb|CI141275.1|CI141275
genomic: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAGgtgattttct ... atcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGT
EST: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAG GTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTEST: gi|58586909|gb|CF985217.1|CF985217
genomic: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAGgtgattttct ... atcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGT
EST: TCGGCATGAGGATGGAAGCTTCGACGCCTGGAACTGGGGCAGCAAATGAG GTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTEST: gi|12405058|gb|AU166659.1|AU166659
genomic: TCGGCATGAGGATGGAAGCTTCTAC-CCTGGAACTGGGGCAGCAAATGAGgtgattttct ... atcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGT
EST: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAG GTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTEST: gi|58665950|gb|CK054636.1|CK054636
genomic: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAGgtgattttct ... atcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGT
EST: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAG GTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGT
genomic: ATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCAAATGAGgtgattttct ... atcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGT
gagttctaagatgattcgttttatattgtaacttcttgcatgggcatcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTGGTGGTGTTGGAGACAATGACTACATATTTGCTTTTAAGCATGTGGTGC
ttgtaac putative branch site (score: 2)
tcacttc putative PPT
ttttatattgtaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgactctttttatcagagtttctgacctagcatgtggaaacttgagttctaagatgattcgttttatattgtaacttcttgcatgggcatcacttcagGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTGGTGGTGTTGGAGACAATGACTACATATTTGCTTTTAAGCATGTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA