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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaactacttgctgtagaattagtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcagCTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAG

Basic information

species Oryza sativa
transcript LOC_Os06g49990.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687914|gb|CF316153.1|CF316153
EST:     AGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAG                         CTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTC
genomic: AGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaacta ... tcttgatcagCTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTC
EST: gi|33687915|gb|CF316154.1|CF316154
EST:     AGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAG                         CTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTC
genomic: AGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaacta ... tcttgatcagCTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcagCTGAAGGGACAGATCAGCCTGGTAGTATCCCTAAGAGTTGCATAACGCCTCGCACAAAGTGGGAACAAGTCAAG
                                tattaac  putative branch site (score: 1)
                                tattaactatatgt  TA-rich tract