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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtctcgatttgcataacagtgccgtattaccaagatagcttatttacatgttggttctaaaagtacgatccccgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG

Basic information

species Oryza sativa
transcript LOC_Os06g49110.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49110.3 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv18s0001g02550.t01 (Vitis vinifera), 3'ss of exon 10
gtaattgtctcgatttgcataacagtgccgtattaccaagatagcttatttacatgttggttctaaaagtacgatccccgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG
      || | | ||| || |        | | |  | |  | ||  |  |     |   |||| ||  |||       |  |||||||| ||||||||  |||| ||||||||||||||  | || ||| |||| || ||  |||||||||| ||||||||||||
--gtcagtattggtttcca-actttgaatgcactcactaagtggcagaaatttccatca-ttctgaagttacttcaattgggtgacagGTGAAACCTGGTCTGCCTTACTTGGATGTCATAAGGCTGCTTCGGGATAACTCGTCATTGCCAATTGCTGCATATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88835409|gb|CI005099.1|CI005099
EST:     GGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88956575|gb|CI092792.1|CI092792
EST:     AGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTNAGGGACAAT
genomic: AGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29685228|gb|CB681503.1|CB681503
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|313079584|gb|HO213142.1|HO213142
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29645009|gb|CB650016.1|CB650016
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29619412|gb|CB624424.1|CB624424
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624059|gb|CB629070.1|CB629070
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624058|gb|CB629069.1|CB629069
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29645159|gb|CB650166.1|CB650166
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29661435|gb|CB657710.1|CB657710
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29617547|gb|CB622559.1|CB622559
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29629261|gb|CB634272.1|CB634272
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624061|gb|CB629072.1|CB629072
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86536175|gb|CI176381.1|CI176381
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29615587|gb|CB620599.1|CB620599
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29641825|gb|CB646832.1|CB646832
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88245599|gb|CI245448.1|CI245448
EST:     AGAAGGAGCTGATATTCTTCTG                         GTAATACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACTAT
genomic: AGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624057|gb|CB629068.1|CB629068
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88247732|gb|CI247581.1|CI247581
EST:     GGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCCGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86874617|gb|CI318176.1|CI318176
EST:     GGAGC-GATATTCTTCT-                         GTAAAACCTGGATTCCCATACGTTGGATGTCATCCGTCTTCTTAGGGACAA
genomic: GGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATAC-TTGGATGTCATCCGTCTTCTTAGGGACAA
EST: gi|29619109|gb|CB624121.1|CB624121
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTTTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29619316|gb|CB624328.1|CB624328
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|27577435|gb|CB000130.1|CB000130
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29660274|gb|CB656549.1|CB656549
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|38471437|gb|CF955568.1|CF955568
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|33680655|gb|CF308894.1|CF308894
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGNATGTCATCCGTCTTCTTAGGGACAA
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGG-ATGTCATCCGTCTTCTTAGGGACAA
EST: gi|29621570|gb|CB626581.1|CB626581
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29688150|gb|CB684425.1|CB684425
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86870512|gb|CI320608.1|CI320608
EST:     AGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: AGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|15852419|gb|BI805215.1|BI805215
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88907517|gb|CI090311.1|CI090311
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|25806864|gb|CA762825.1|CA762825
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88974531|gb|CI022072.1|CI022072
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|58601365|gb|CK011893.1|CK011893
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88226022|gb|CI225938.1|CI225938
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29666982|gb|CB663257.1|CB663257
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|27554454|gb|CA998354.1|CA998354
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|8528033|gb|AU092848.1|AU092848
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88956530|gb|CI092762.1|CI092762
EST:     GCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29688149|gb|CB684424.1|CB684424
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624056|gb|CB629067.1|CB629067
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86251556|gb|CI016845.1|CI016845
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29616371|gb|CB621383.1|CB621383
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86869618|gb|CI322104.1|CI322104
EST:     GATGAGCCAGAAGGAGCTGATATTCTTCT-                         GTAAAACCT-GATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86434303|gb|CI094646.1|CI094646
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29660428|gb|CB656703.1|CB656703
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88202644|gb|CI200999.1|CI200999
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86493942|gb|CI136575.1|CI136575
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|396941280|gb|HO188489.1|HO188489
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624060|gb|CB629071.1|CB629071
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29655803|gb|CB652078.1|CB652078
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29688151|gb|CB684426.1|CB684426
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29679003|gb|CB675278.1|CB675278
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29629260|gb|CB634271.1|CB634271
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29672091|gb|CB668366.1|CB668366
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29613358|gb|CB618371.1|CB618371
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 64 (downstream exon)
Score: 37

TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccaagatagcttatttacatgttggttctaaaagtacgatccccgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG
                           ttctaaa  putative branch site (score: 37)
                                         tccccgttt  putative PPT
            ttatttacat  TA-rich tract