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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctcatcccatgcacacaaatattcaacagaagcaaaatttctgtttgtgttcttgtctacaattcagtattattggtagcctgcattgttcacatttcctctttgcttatgtggtcaatggttttttttctctttgctgaagGGTTTAAGCATCGAGATTGATGATGACATAGCTGCTGATGAAAATGAGAAGGAGGCTTTGCAGGACATAATTTCTAATATTAAATTGAGTGAGGGGTACC

Basic information

species Oryza sativa
transcript LOC_Os06g48640.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623913|gb|CB628924.1|CB628924
EST:     CGCGTTTATCATACCACGCCAT                         GGTTTAAGCATCGAGATTGATGATGACATAGCTGCTGATGAAAATGAGAAG
genomic: CGCGTTTATCATAGCACGCCATgtgagcctca ... tttgctgaagGGTTTAAGCATCGAGATTGATGATGACATAGCTGCTGATGAAAATGAGAAG
EST: gi|29673567|gb|CB669842.1|CB669842
EST:     CTGATGATTTTCAACTGAAGAAGCAATTCGCGTTTATCATAGCACGCCAT                         GGTTTAAGCATCGAGATTGATGATGACATAGCTGCTGATGAAAATGAGAAG
genomic: CTGATGATTTTCAACTGAAGAAGCAATTCGCGTTTATCATAGCACGCCATgtgagcctca ... tttgctgaagGGTTTAAGCATCGAGATTGATGATGACATAGCTGCTGATGAAAATGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcacatttcctctttgcttatgtggtcaatggttttttttctctttgctgaagGGTTTAAGCATCGAGATTGATGATGACATAGCTGCTGATGAAAATGAGAAGGAGGCTTTGCAGGACATAATTTCTAATATTAAATTGAGTGAGGGGTACC
                                  ttttttttctctttgc  CT-rich tract
                                  ttttttttctcttt  TA-rich tract