1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tactagcaagtgacacggcaagaagaaataataagtttttaggcaccattctcacctcgacattttctgaccatgagtgaaactgtacattcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGCTCCGATCAATTGCAAAGGAAAGAAGGAATTTCCCAGGAGCTTCATACA
species | Oryza sativa |
transcript | LOC_Os06g45100.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAA GCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGEST: gi|88270831|gb|CI380131.1|CI380131
genomic: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAgtaagcccca ... tcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAG
EST: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAA GCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGEST: gi|88224176|gb|CI224025.1|CI224025
genomic: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAgtaagcccca ... tcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAG
EST: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAA GCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGEST: gi|87033456|gb|CI188080.1|CI188080
genomic: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAgtaagcccca ... tcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAG
EST: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAA GCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGEST: gi|86492114|gb|CI134747.1|CI134747
genomic: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAgtaagcccca ... tcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAG
EST: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAA GCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAG
genomic: GAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAgtaagcccca ... tcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAG
ccattctcacctcgacattttctgaccatgagtgaaactgtacattcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGCTCCGATCAATTGCAAAGGAAAGAAGGAATTTCCCAGGAGCTTCATACA
ttctgac putative branch site (score: 5)
cattcttct putative PPT
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactagcaagtgacacggcaagaagaaataataagtttttaggcaccattctcacctcgacattttctgaccatgagtgaaactgtacattcttctgcagGCCAAGACATATGATCCTGATGGAGAGTATGTTGCCTACTGGTTGCCAGAGCTCCGATCAATTGCAAAGGAAAGAAGGAATTTCCCAGGAGCTTCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -gcaagtg
- - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - -ggcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtaca