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gtatttgtctacccttgtgttgtgcaattcatcaacatcaattacagcttgtgtttacctaataatgctacctttcatttgtgcagAAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCAGTCCTATGGGAGCTTAGCCTTCTGCAGAAGCATTACGATTCCTCTGTTT
species | Oryza sativa |
transcript | LOC_Os06g30320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACATGTTGGAAAATGATTCTGGTGGTGGCTCCCTGTCTTGCTTAGTTGCG AAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCAEST: gi|27546861|gb|CA764891.2|CA764891
genomic: ACATGTTGGAAAATGATTCTGGTGGTGGCTCCCTGTCTTGCTTAGTTGCGgtatttgtct ... atttgtgcagAAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCA
EST: CATGTTGGNAAATGATTCTGGTGGGTGGCTCCCTGTCTTGCTTANTTGCG AAANATTGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCCCEST: gi|58684363|gb|CK073050.1|CK073050
genomic: CATGTTGGAAAATGATTCTGGTGG-TGGCTCCCTGTCTTGCTTAGTTGCGgtatttgtct ... atttgtgcagAAATAT-GACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTC
EST: ACATGTTGGAAAATGATTCTGGTGGTGGCTCCCTGTCTTGCTTAGTTGCG AAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCAEST: gi|29622622|gb|CB627633.1|CB627633
genomic: ACATGTTGGAAAATGATTCTGGTGGTGGCTCCCTGTCTTGCTTAGTTGCGgtatttgtct ... atttgtgcagAAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCA
EST: ACATGTTGGAAAATGATTCTGGTGGTGGCTCCCTGTCTTGCTTAGTTGCG AAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCA
genomic: ACATGTTGGAAAATGATTCTGGTGGTGGCTCCCTGTCTTGCTTAGTTGCGgtatttgtct ... atttgtgcagAAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCA
tcaacatcaattacagcttgtgtttacctaataatgctacctttcatttgtgcagAAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCAGTCCTATGGGAGCTTAGCCTTCTGCAGAAGCATTACGATTCCTCTGTTT
acctaat putative branch site (score: 8)
cctttcattt putative PPT
taataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtctacccttgtgttgtgcaattcatcaacatcaattacagcttgtgtttacctaataatgctacctttcatttgtgcagAAATATGACCCAGAAGCTAAAGATCCTTATCTGAGTGGGGCACTTGCCTCAGTCCTATGGGAGCTTAGCCTTCTGCAGAAGCATTACGATTCCTCTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC