1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacaatatatacacatgatttgtgcctgtgattcccgatataatcatggaacctctctgctttatatttcgtttcaaacatttttatccatgtataacaacgtatagttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCAAACACTATAATCAAGACTATGATGAGGGGAGCATCAAGCAGCAG
species | Oryza sativa |
transcript | LOC_Os06g20320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAG TTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCEST: gi|86259623|gb|CI065496.1|CI065496
genomic: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAGgtaacaatat ... agttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTC
EST: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAG TTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCEST: gi|22307622|gb|BQ908844.1|BQ908844
genomic: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAGgtaacaatat ... agttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTC
EST: TTAAACCAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAG TTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCEST: gi|88956490|gb|CI092736.1|CI092736
genomic: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAGgtaacaatat ... agttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTC
EST: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAG TTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCEST: gi|25806488|gb|CA762449.1|CA762449
genomic: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAGgtaacaatat ... agttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTC
EST: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATTTGCAG TTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTC
genomic: TTAAACAAATGTTGGCTGTTGGTGAAATATTCAAGGCTGAAAATCTGCAGgtaacaatat ... agttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTC
tttatatttcgtttcaaacatttttatccatgtataacaacgtatagttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCAAACACTATAATCAAGACTATGATGAGGGGAGCATCAAGCAGCAG
gtataac putative branch site (score: 34)
tttcaaacatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatatatacacatgatttgtgcctgtgattcccgatataatcatggaacctctctgctttatatttcgtttcaaacatttttatccatgtataacaacgtatagttctgcagTTTTCGACCGAGCAACTGGTAAAGGAAGTTGAGAACTCTATAGAAGAGTTCAAACACTATAATCAAGACTATGATGAGGGGAGCATCAAGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA