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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggatggaaacattttgttcagtgtgttgggctcgtttcggacaaaacattgtattcaagtttctttcttcgtccatggttgatgtgctgctttttgacagAGACAGCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAAG

Basic information

species Oryza sativa
transcript LOC_Os06g12470.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38474032|gb|CF958164.1|CF958164
EST:     CGCCTACATCATCTATGCTAAAATTCACTCCGCTAAGCCAGAAGCGTTTT                         AGACAGCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCACCTATGGCATAAA
genomic: CGCCTACATCATCTATGCTAAAATTCACTCCGCTAAGCCAGAAGCGTTTTgtgagtaaaa ... tttttgacagAGACAGCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattgtattcaagtttctttcttcgtccatggttgatgtgctgctttttgacagAGACAGCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAAG
                               ggttgat  putative branch site (score: 5)
                                         ctgcttttt  putative PPT
      tattcaa  TA-rich tract