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gtagttttcaaattgtcagcattcatgttatttgtacgcatatactcttattttgtgttactaaatgtccttgagcattattctgttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAATTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCEST: gi|38477689|gb|CF961822.1|CF961822
genomic: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGgtagttttca ... gttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATC
EST: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCEST: gi|58602124|gb|CK012652.1|CK012652
genomic: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGgtagttttca ... gttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATC
EST: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCEST: gi|58654377|gb|CK043057.1|CK043057
genomic: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGgtagttttca ... gttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATC
EST: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCEST: gi|58598364|gb|CK008892.1|CK008892
genomic: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGgtagttttca ... gttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATC
EST: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG GTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCEST: gi|4879034|gb|AU063333.1|AU063333
genomic: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGgtagttttca ... gttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATC
EST: AAGGAAAGTTGTGCCAGGA-CAAAAACCATCCGACTCAACATAGTGCCTG GTACGGATGATGGTGACGTTATAAAGTTGGTTAG-TCAGGTGGAGCAGATC
genomic: AAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTGgtagttttca ... gttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATC
atatactcttattttgtgttactaaatgtccttgagcattattctgttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG
tactaaa putative branch site (score: 18)
ttctgttc putative PPT
tcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttttcaaattgtcagcattcatgttatttgtacgcatatactcttattttgtgttactaaatgtccttgagcattattctgttcattcagGTACGGATGATGGTGACGTTATAAAGTTGGTTAGATCAGGTGGAGCAGATCCAGATGGTGGTAGTCCTGGTGATCTTTATGTAACTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG