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...atgcgaaatcttatgactgctgtggcatggcactatgtgtttccatagccttcccttggagaaacggcatttataactcctctcattttctgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAGCGTACCTGGGCTGAAGGACTGCAGCTTGCGGCATCTATTCGTTTTCAG
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|58662294|gb|CK050974.1|CK050974
genomic: CTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|29641486|gb|CB646493.1|CB646493
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|58687727|gb|CK076414.1|CK076414
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|58677581|gb|CK066268.1|CK066268
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|58657844|gb|CK046524.1|CK046524
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGANCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|58685041|gb|CK073728.1|CK073728
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|29685601|gb|CB681876.1|CB681876
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAEST: gi|58689016|gb|CK077703.1|CK077703
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
EST: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA TGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
genomic: GCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAAgtatgcacag ... tgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCA
tagccttcccttggagaaacggcatttataactcctctcattttctgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAGCGTACCTGGGCTGAAGGACTGCAGCTTGCGGCATCTATTCGTTTTCAG
ttataac putative branch site (score: 79)
ctcctctcattttctg CT-rich tract
atttataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcgaaatcttatgactgctgtggcatggcactatgtgtttccatagccttcccttggagaaacggcatttataactcctctcattttctgtccatcagTGAAGCAGACGAGATTTACAAAATCTGTAGCATTCTTGGTACTCCGAATCAGCGTACCTGGGCTGAAGGACTGCAGCTTGCGGCATCTATTCGTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT