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gtatgcttttcctatgagttaaatccatgtctcatttatcaactttgtacaaatgtggacattctatttcatatacttaacaaaatctaaccatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG GTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGAEST: gi|29678789|gb|CB675064.1|CB675064
genomic: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGgtatgctttt ... accatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGA
EST: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG GTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGAEST: gi|218482029|gb|FG948463.1|FG948463
genomic: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGgtatgctttt ... accatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGA
EST: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG GTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGAEST: gi|701858|gb|D48149.1|D48149
genomic: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGgtatgctttt ... accatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGA
EST: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG GTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGA
genomic: GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGgtatgctttt ... accatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGA
ttgtacaaatgtggacattctatttcatatacttaacaaaatctaaccatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT
atctaac putative branch site (score: 36)
tatttcatatacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttttcctatgagttaaatccatgtctcatttatcaactttgtacaaatgtggacattctatttcatatacttaacaaaatctaaccatgttagGTGGTTGCTACTGGAGTGACAACTTGGTTGACTGACAAAGCTGGTCGACGACTCCTCCTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC