1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttatcccaatttccctgcacgcccaatagcattgcacattttttacaattttacttaatggcttgctaatatatattttttcatggtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGCATTGTAGAGCTTCTTATATGTATGAAGTTTGGACATG
species | Oryza sativa |
transcript | LOC_Os05g48060.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAG CAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGEST: gi|86497839|gb|CI140472.1|CI140472
genomic: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAGgttatcccaa ... gtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATG
EST: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAG CAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGEST: gi|27547688|gb|CA767380.2|CA767380
genomic: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAGgttatcccaa ... gtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATG
EST: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAG CAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGEST: gi|32948073|gb|BP184645.1|BP184645
genomic: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAGgttatcccaa ... gtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATG
EST: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAG CAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGEST: gi|86413288|gb|CI067693.1|CI067693
genomic: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAGgttatcccaa ... gtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATG
EST: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAG CAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCNAGCTATATG
genomic: TTGATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAGgttatcccaa ... gtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATG
ttttacaattttacttaatggcttgctaatatatattttttcatggtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGCATTGTAGAGCTTCTTATATGTATGAAGTTTGGACATG
tgctaat putative branch site (score: 11)
ttgctaatatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatcccaatttccctgcacgcccaatagcattgcacattttttacaattttacttaatggcttgctaatatatattttttcatggtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGCATTGTAGAGCTTCTTATATGTATGAAGTTTGGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT