1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acttgtttagttgctctacctagtctgaatttcgacatctccaaccattatattgagttcataaccaagtctgatatcttgtttattacttcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCT
species | Oryza sativa |
transcript | LOC_Os05g46580.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|88536591|gb|CI466359.1|CI466359
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|89168374|gb|CI109578.1|CI109578
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|88384763|gb|CI556641.1|CI556641
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|58685871|gb|CK074558.1|CK074558
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|58678948|gb|CK067635.1|CK067635
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|88366302|gb|CI551134.1|CI551134
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|86434011|gb|CI094354.1|CI094354
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|88247621|gb|CI247470.1|CI247470
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|163928447|gb|EG711347.1|EG711347
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAAEST: gi|88247405|gb|CI247254.1|CI247254
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAA
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|88968869|gb|CI098954.1|CI098954
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATEST: gi|58674478|gb|CK063165.1|CK063165
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
EST: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAG GCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
genomic: CAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGgtttgccttg ... tcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGAT
cattatattgagttcataaccaagtctgatatcttgtttattacttcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCT
cttcattctt CT-rich tract
atatcttgtttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgtttagttgctctacctagtctgaatttcgacatctccaaccattatattgagttcataaccaagtctgatatcttgtttattacttcattcttagGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - agttgct
- - - - - - - - - - - - - - - - - -catctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa