1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctcatttttgcttgttaatttgttcatgtggttgcataactagatgaccatcattatggtttctccatgaagttaaatatatttttcctatgccgtccagGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCC
species | Oryza sativa |
transcript | LOC_Os05g45960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACT GTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAEST: gi|218484591|gb|FG954366.1|FG954366
genomic: TTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTgtgagtgatc ... tgccgtccagGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCA
EST: TTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACT GTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCA
genomic: TTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTgtgagtgatc ... tgccgtccagGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCA
gaccatcattatggtttctccatgaagttaaatatatttttcctatgccgtccagGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCC
tttttcctat CT-rich tract
aagttaaatatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcatttttgcttgttaatttgttcatgtggttgcataactagatgaccatcattatggtttctccatgaagttaaatatatttttcctatgccgtccagGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -ttgcttg
- - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatg