1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttgccatacagttcactttgactttcaagtatcactccttttactcacttcttgcatgcatctttttcttctactcactattcataacttctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
species | Oryza sativa |
transcript | LOC_Os05g44922.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGEST: gi|27578240|gb|CB000935.1|CB000935
genomic: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
EST: GCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGEST: gi|58679575|gb|CK068262.1|CK068262
genomic: GCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
EST: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGEST: gi|56157880|gb|C27510.2|C27510
genomic: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
EST: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGEST: gi|2310958|gb|C27113.1|C27113
genomic: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
EST: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCA-GAGCAAAA-GATGGAGATN-CTATTAAATATATAGAEST: gi|27576923|gb|CA999617.1|CA999617
genomic: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGA
EST: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGEST: gi|27578068|gb|CB000763.1|CB000763
genomic: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
EST: CTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAGEST: gi|27576260|gb|CA998954.1|CA998954
genomic: CTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
EST: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAG GACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
genomic: GAAATAAGCTACTGCTTGATATTGGTCTTTGGCTGACTCACAAGATAAAGgtacacaaaa ... tctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
tcacttcttgcatgcatctttttcttctactcactattcataacttctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
cttctatt CT-rich tract
tattcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgccatacagttcactttgactttcaagtatcactccttttactcacttcttgcatgcatctttttcttctactcactattcataacttctattgtagGACCACTTCAAGAGCAAAAAGATGGAGATGACTATTAAATATATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -gccatac
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc