1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttttaggaggcagaaattaacatgcttaattagagatgtttcattttcgtattgcctcttagccaatgaactaaaacgaagagcactgctatttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCAGGAATTG
species | Oryza sativa |
transcript | LOC_Os05g43570.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAG ATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTEST: gi|86827108|gb|CI270824.1|CI270824
genomic: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGgtatgtgtga ... atttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTT
EST: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAG ATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTEST: gi|86477542|gb|CI120175.1|CI120175
genomic: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGgtatgtgtga ... atttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTT
EST: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAG ATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTEST: gi|29623780|gb|CB628791.1|CB628791
genomic: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGgtatgtgtga ... atttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTT
EST: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAG ATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTT
genomic: ACCGGAGCACAAATTCAAAGTTCATCTAAGTCAGGTCCATGGAGAAAGgtatgtgtga ... atttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTT
ttcgtattgcctcttagccaatgaactaaaacgaagagcactgctatttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCAGGAATTG
aactaaa putative branch site (score: 25)
ctattttt putative PPT
tattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaggaggcagaaattaacatgcttaattagagatgtttcattttcgtattgcctcttagccaatgaactaaaacgaagagcactgctatttttgcagATGCTTCCGTCCAAGGATGCAAACTTTGTTGGCTATACATATAAGAATTTTGAAATTGTAAATGATGATGAGGTTGCAGGAATTG
- - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgct