1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccagttataacaggaaaagaaagttgcctctgatttctgtcatctctgaaatattaatgcccctcttctttcattgtctttattttctcatcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG
species | Oryza sativa |
transcript | LOC_Os05g36070.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: T-GGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|88244093|gb|CI243215.1|CI243215
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|88249358|gb|CI249207.1|CI249207
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|86539354|gb|CI179560.1|CI179560
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|88841700|gb|CI080956.1|CI080956
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|86538870|gb|CI179076.1|CI179076
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|8859158|gb|AU096476.1|AU096476
genomic: TGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCNCEST: gi|86431507|gb|CI085118.1|CI085118
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|89174130|gb|CI042023.1|CI042023
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACGATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|29628338|gb|CB633349.1|CB633349
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|86600029|gb|CI258369.1|CI258369
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: AGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|86435528|gb|CI106761.1|CI106761
genomic: AGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGACTGTGACCATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAEST: gi|29628337|gb|CB633348.1|CB633348
genomic: TGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACA-TTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCA
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|86431057|gb|CI083480.1|CI083480
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: AATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATCGGTTTTGTTGCTGTTCACEST: gi|86880509|gb|CI320999.1|CI320999
genomic: AATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|86413082|gb|CI067487.1|CI067487
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACEST: gi|88840958|gb|CI000920.1|CI000920
genomic: TCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: TGGGTCTGACTGTGACAATAATAGTGGTGAACTGGTTCCAAGCTGCACAG CCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTCTGACTGTGACAATAATAGTGATGAACTGGTTCCAAGCTGCACAGgtgagttctg ... tcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
ctgaaatattaatgcccctcttctttcattgtctttattttctcatcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG
tattaat putative branch site (score: 2)
tgcccctcttctttca CT-rich tract
attgtctttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagttataacaggaaaagaaagttgcctctgatttctgtcatctctgaaatattaatgcccctcttctttcattgtctttattttctcatcatatgcagCCTGCTCTGTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT